Strain identifier

BacDive ID: 15310

Type strain: Yes

Species: Streptomyces platensis

Strain Designation: BJ 6, 12096

Strain history: CIP <- 2000, IFO <- H. Kawaguchi, Bristol -Banyu Res. Inst. : strain 12096

NCBI tax ID(s): 249580 (species)

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General

@ref: 9826

BacDive-ID: 15310

DSM-Number: 40823

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces platensis BJ 6 is an obligate aerobe, spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 249580
  • Matching level: species

strain history

@refhistory
9826<- H.D. Tresner, BJ 6
67770KCC S-0954 <-- Bristol-Banyu Res. Labs.; 12096.
120015CIP <- 2000, IFO <- H. Kawaguchi, Bristol -Banyu Res. Inst. : strain 12096

doi: 10.13145/bacdive15310.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces platensis
  • full scientific name: Streptomyces platensis Tresner and Backus 1956 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptomyces libani subsp. rufus
    20215Streptomyces hygroscopicus subsp. glebosus
    20215Streptomyces glebosus

@ref: 9826

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Kitasatosporales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces platensis

full scientific name: Streptomyces platensis Tresner and Backus 1956 emend. Nouioui et al. 2018

strain designation: BJ 6, 12096

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no96.231
69480100positive
120015nopositiverod-shaped

colony morphology

  • @ref: 120015

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9826GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
39729MEDIUM 129 - for Pseudonocardia, Nocardia, Skermania and Streptomyces seoulensis, Streptomyces stramineusyesDistilled water make up to (1000.000 ml);Agar (20.000 g);Glucose (10.000g);Yeast extract (1.000 g);Beef extract (1.000 g);Casamino acids (2.000 g)
9826ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
120015CIP Medium 129yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=129

culture temp

@refgrowthtypetemperaturerange
9826positivegrowth28mesophilic
39729positivegrowth30mesophilic
67770positivegrowth28mesophilic
120015positivegrowth25-30mesophilic
120015nogrowth10psychrophilic
120015nogrowth37mesophilic
120015nogrowth41thermophilic
120015nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 120015
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

  • @ref: 9826
  • compound: glebomycin

halophily

@refsaltgrowthtested relationconcentration
120015NaClpositivegrowth0-6 %
120015NaClnogrowth8 %
120015NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12001516947citrate-carbon source
1200154853esculin-hydrolysis
120015606565hippurate-hydrolysis
12001517632nitrate+reduction
12001516301nitrite-reduction
12001517632nitrate-respiration

metabolite production

@refmetaboliteproductionChebi-ID
67770glebomycinyes
120015indoleno35581

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12001515688acetoin-
12001517234glucose-

enzymes

@refvalueactivityec
120015oxidase-
120015beta-galactosidase-3.2.1.23
120015alcohol dehydrogenase-1.1.1.1
120015gelatinase+/-
120015amylase+
120015DNase-
120015caseinase-3.4.21.50
120015catalase+1.11.1.6
120015tween esterase+
120015gamma-glutamyltransferase-2.3.2.2
120015lecithinase-
120015lipase-
120015lysine decarboxylase-4.1.1.18
120015ornithine decarboxylase-4.1.1.17
120015phenylalanine ammonia-lyase-4.3.1.24
120015protease-
120015tryptophan deaminase-
120015urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120015-+---+-+--++-+---+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120015+++++-+++++-+------+--+--++-+--++++++------------++--+-----++-+------+--++-+---++---+-+-+++++++--++

Isolation, sampling and environmental information

isolation

  • @ref: 9826
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
98261Risk group (German classification)
1200151Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces hygroscopicus 16S ribosomal RNA gene, partial sequenceU72167269ena1912
20218Streptomyces hygroscopicus subsp. glebosus gene for 16S rRNA, partial sequenceAB122754565ena249580
20218Streptomyces hygroscopicus subsp. glebosus gene for 16S rRNA, partial sequence, strain: NBRC 13786AB1844791474ena249580
20218Streptomyces glebosus strain NRRL B-3248 16S ribosomal RNA gene, partial sequenceEU1701201450ena249580
20218Streptomyces hygroscopicus subsp. glebosus 16S rRNA gene, type strain LMG 19950AJ7813861481ena249580
20218Streptomyces hygroscopicus subsp. glebosus strain CGMCC 4.1873 16S ribosomal RNA gene, partial sequenceHQ2444561373ena249580
67770X86067ena

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces glebosus JCM 4954GCA_014656235scaffoldncbi249580
66792Streptomyces glebosus strain JCM 4954249580.4wgspatric249580
66792Streptomyces glebosus strain NBRC 13786249580.3wgspatric249580
67770Streptomyces glebosus NBRC 13786GCA_009811575contigncbi249580

GC content

  • @ref: 67770
  • GC-content: 71.1
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno98.439no
gram-positiveyes90.264no
anaerobicno99.116no
aerobicyes93.28no
halophileno89.694no
spore-formingyes96.163no
glucose-utilyes90.888no
thermophileno98.485yes
motileno93.822no
glucose-fermentno91.036no

External links

@ref: 9826

culture collection no.: DSM 40823, ATCC 14607, CGMCC 4.1873, CIP 106832, IFO 13786, IFO 13982, JCM 4954, LMG 19950, NBRC 13786, NBRC 13982, NRRL B-3248, KCTC 9782

straininfo link

  • @ref: 84403
  • straininfo: 36122

literature

  • topic: Transcriptome
  • Pubmed-ID: 22172557
  • title: Taxonomic evaluation of the Streptomyces hygroscopicus clade using multilocus sequence analysis and DNA-DNA hybridization, validating the MLSA scheme for systematics of the whole genus.
  • authors: Rong X, Huang Y
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2011.10.004
  • year: 2011
  • mesh: DNA, Bacterial/*chemistry/*genetics, Molecular Sequence Data, Multilocus Sequence Typing/*methods, *Nucleic Acid Hybridization, Sequence Analysis, DNA, Streptomyces/*classification/*genetics
  • topic2: Phylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9826Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40823)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40823
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39729Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/19006
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84403Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36122.1StrainInfo: A central database for resolving microbial strain identifiers
120015Curators of the CIPCollection of Institut Pasteur (CIP 106832)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106832