Strain identifier
version 8.1 (current version)
General
@ref: 58087
BacDive-ID: 153018
keywords: Bacteria, aerobe, mesophilic
description: Plesiomonas shigelloides CCUG 48327 is an aerobe, mesophilic bacterium that was isolated from Human vomiting,89-yr-old man.
NCBI tax id
- NCBI tax id: 703
- Matching level: species
doi: 10.13145/bacdive153018.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Plesiomonas
- species: Plesiomonas shigelloides
- full scientific name: Plesiomonas shigelloides corrig. (Bader 1954) Habs and Schubert 1962 (Approved Lists 1980)
synonyms
@ref synonym 20215 Pseudomonas shigelloides 20215 Pleisomonas shigelloides
@ref: 58087
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacterales, not assigned to family
genus: Plesiomonas
species: Plesiomonas shigelloides
type strain: no
Culture and growth conditions
culture temp
- @ref: 58087
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 58087
- oxygen tolerance: aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | - | fermentation |
68368 | 27613 | amygdalin | - | fermentation |
68368 | 28053 | melibiose | - | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | - | fermentation |
68368 | 30911 | sorbitol | - | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 16899 | D-mannitol | - | fermentation |
68368 | 17634 | D-glucose | - | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | + | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | + | hydrolysis |
68374 | 18257 | ornithine | + | degradation |
68374 | 29016 | arginine | + | hydrolysis |
68374 | 25094 | lysine | + | degradation |
68374 | 16199 | urea | - | hydrolysis |
68374 | 18403 | L-arabitol | - | builds acid from |
68374 | 18024 | D-galacturonic acid | - | builds acid from |
68374 | Potassium 5-ketogluconate | - | builds acid from | |
68374 | 16899 | D-mannitol | - | builds acid from |
68374 | 17306 | maltose | - | builds acid from |
68374 | 15963 | ribitol | - | builds acid from |
68374 | 18394 | palatinose | - | builds acid from |
68374 | 15792 | malonate | - | assimilation |
68374 | 27897 | tryptophan | + | energy source |
68374 | 17634 | D-glucose | - | builds acid from |
68374 | 17992 | sucrose | - | builds acid from |
68374 | 30849 | L-arabinose | - | builds acid from |
68374 | 18333 | D-arabitol | - | builds acid from |
68374 | 27082 | trehalose | + | builds acid from |
68374 | 62345 | L-rhamnose | - | builds acid from |
68374 | 17268 | myo-inositol | - | builds acid from |
68374 | 17057 | cellobiose | - | builds acid from |
68374 | 30911 | sorbitol | - | builds acid from |
68377 | 17634 | D-glucose | + | builds acid from |
68377 | 15824 | D-fructose | - | builds acid from |
68377 | 17306 | maltose | + | builds acid from |
68377 | 17992 | sucrose | - | builds acid from |
68377 | 18257 | ornithine | + | degradation |
68377 | 16199 | urea | - | hydrolysis |
68377 | 27897 | tryptophan | + | energy source |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68377 | 35581 | indole | yes |
68374 | 35581 | indole | yes |
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | yes |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test |
---|---|---|---|---|
68377 | 35581 | indole | + | |
68374 | 35581 | indole | + | |
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68377 | tryptophan deaminase | + | 4.1.99.1 |
68377 | gamma-glutamyltransferase | - | 2.3.2.2 |
68377 | proline-arylamidase | + | 3.4.11.5 |
68377 | beta-galactosidase | + | 3.2.1.23 |
68377 | alkaline phosphatase | + | 3.1.3.1 |
68377 | lipase | - | |
68377 | urease | - | 3.5.1.5 |
68377 | ornithine decarboxylase | + | 4.1.1.17 |
68377 | beta-lactamase | + | 3.5.2.6 |
68374 | L-aspartate arylamidase | - | 3.4.11.21 |
68374 | alpha-maltosidase | - | |
68374 | alpha-galactosidase | - | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | + | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | - | 3.2.1.21 |
68374 | lipase | - | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | + | 4.1.1.18 |
68374 | arginine dihydrolase | + | 3.5.3.6 |
68374 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | cytochrome oxidase | + | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
@ref fatty acid percentage ECL 58087 C12:0 4.6 12 58087 C14:0 2.5 14 58087 C16:0 35 16 58087 C18:0 4.9 18 58087 C12:0 3OH 2.9 13.455 58087 C13:0 ISO 2OH 0.7 13.814 58087 C14:0 3OH/C16:1 ISO I 2.9 15.485 58087 C16:0 anteiso 0.3 15.717 58087 C16:1 ω7c 27.5 15.819 58087 C16:1 ω9c 1.4 15.774 58087 C17:0 CYCLO 4.7 16.888 58087 C18:1 ω7c /12t/9t 7.3 17.824 58087 C18:1 ω9c 2.3 17.769 58087 C18:2 ω6,9c/C18:0 ANTE 1.7 17.724 58087 Unidentified 0.6 10.91 58087 unknown 12.486 0.8 12.486 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
@ref fatty acid percentage ECL 58087 C12:0 4.6 12 58087 C14:0 2.5 14 58087 C16:0 35 16 58087 C18:0 4.9 18 58087 C12:0 3OH 2.9 13.455 58087 C13:0 ISO 2OH 0.7 13.814 58087 C14:0 3OH/C16:1 ISO I 2.9 15.485 58087 C16:0 anteiso 0.3 15.717 58087 C16:1 ω7c 27.5 15.819 58087 C16:1 ω9c 1.4 15.774 58087 C17:0 CYCLO 4.7 16.888 58087 C18:1 ω7c /12t/9t 7.3 17.824 58087 C18:1 ω9c 2.3 17.769 58087 C18:2 ω6,9c/C18:0 ANTE 1.7 17.724 58087 Unidentified 0.6 10.91 58087 unknown 12.486 0.8 12.486 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
58087 | - | + | + | - | - | + | - | - | - | - | + | - | - | - | - | + | - | + | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
58087 | + | + | + | + | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | + |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
58087 | + | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | - | - | - | - | - | - | + | - | - | - | - | - | - |
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
58087 | + | + | - | + | - | + | - | - | + | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 58087
- sample type: Human vomiting,89-yr-old man
- sampling date: 2003-10-01
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | #Male |
#Host Body Product | #Gastrointestinal tract | #Vomit |
#Infection | #Patient |
External links
@ref: 58087
culture collection no.: CCUG 48327
straininfo link
- @ref: 106888
- straininfo: 215161
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
58087 | Curators of the CCUG | https://www.ccug.se/strain?id=48327 | Culture Collection University of Gothenburg (CCUG) (CCUG 48327) | |
68368 | Automatically annotated from API 20E | |||
68374 | Automatically annotated from API ID32E | |||
68377 | Automatically annotated from API NH | |||
68382 | Automatically annotated from API zym | |||
106888 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID215161.1 |