Strain identifier

BacDive ID: 153018

Type strain: No

Species: Plesiomonas shigelloides

NCBI tax ID(s): 703 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 58087

BacDive-ID: 153018

keywords: Bacteria, aerobe, mesophilic

description: Plesiomonas shigelloides CCUG 48327 is an aerobe, mesophilic bacterium that was isolated from Human vomiting,89-yr-old man.

NCBI tax id

  • NCBI tax id: 703
  • Matching level: species

doi: 10.13145/bacdive153018.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Plesiomonas
  • species: Plesiomonas shigelloides
  • full scientific name: Plesiomonas shigelloides corrig. (Bader 1954) Habs and Schubert 1962 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Pseudomonas shigelloides
    20215Pleisomonas shigelloides

@ref: 58087

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacterales, not assigned to family

genus: Plesiomonas

species: Plesiomonas shigelloides

type strain: no

Culture and growth conditions

culture temp

  • @ref: 58087
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 58087
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose-fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis
6837418257ornithine+degradation
6837429016arginine+hydrolysis
6837425094lysine+degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol-builds acid from
6837417306maltose-builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan+energy source
6837417634D-glucose-builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose-builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose+builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol-builds acid from
6837717634D-glucose+builds acid from
6837715824D-fructose-builds acid from
6837717306maltose+builds acid from
6837717992sucrose-builds acid from
6837718257ornithine+degradation
6837716199urea-hydrolysis
6837727897tryptophan+energy source

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleyes
6837435581indoleyes
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6837735581indole+
6837435581indole+
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68377tryptophan deaminase+4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase+3.4.11.5
68377beta-galactosidase+3.2.1.23
68377alkaline phosphatase+3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase+4.1.1.17
68377beta-lactamase+3.5.2.6
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase+3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase-
68374urease-3.5.1.5
68374lysine decarboxylase+4.1.1.18
68374arginine dihydrolase+3.5.3.6
68374ornithine decarboxylase+4.1.1.17
68368cytochrome oxidase+1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • @reffatty acidpercentageECL
    58087C12:04.612
    58087C14:02.514
    58087C16:03516
    58087C18:04.918
    58087C12:0 3OH2.913.455
    58087C13:0 ISO 2OH0.713.814
    58087C14:0 3OH/C16:1 ISO I2.915.485
    58087C16:0 anteiso0.315.717
    58087C16:1 ω7c27.515.819
    58087C16:1 ω9c1.415.774
    58087C17:0 CYCLO4.716.888
    58087C18:1 ω7c /12t/9t7.317.824
    58087C18:1 ω9c2.317.769
    58087C18:2 ω6,9c/C18:0 ANTE1.717.724
    58087Unidentified0.610.91
    58087unknown 12.4860.812.486
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    58087C12:04.612
    58087C14:02.514
    58087C16:03516
    58087C18:04.918
    58087C12:0 3OH2.913.455
    58087C13:0 ISO 2OH0.713.814
    58087C14:0 3OH/C16:1 ISO I2.915.485
    58087C16:0 anteiso0.315.717
    58087C16:1 ω7c27.515.819
    58087C16:1 ω9c1.415.774
    58087C17:0 CYCLO4.716.888
    58087C18:1 ω7c /12t/9t7.317.824
    58087C18:1 ω9c2.317.769
    58087C18:2 ω6,9c/C18:0 ANTE1.717.724
    58087Unidentified0.610.91
    58087unknown 12.4860.812.486
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
58087-++--+----+----+-+--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
58087+++++---+-----------+

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
58087+++-------------+++------+------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
58087++-+-+--+++-+

Isolation, sampling and environmental information

isolation

  • @ref: 58087
  • sample type: Human vomiting,89-yr-old man
  • sampling date: 2003-10-01
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Gastrointestinal tract#Vomit
#Infection#Patient

External links

@ref: 58087

culture collection no.: CCUG 48327

straininfo link

  • @ref: 106888
  • straininfo: 215161

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
58087Curators of the CCUGhttps://www.ccug.se/strain?id=48327Culture Collection University of Gothenburg (CCUG) (CCUG 48327)
68368Automatically annotated from API 20E
68374Automatically annotated from API ID32E
68377Automatically annotated from API NH
68382Automatically annotated from API zym
106888Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID215161.1