Strain identifier

BacDive ID: 152889

Type strain: No

Species: Clostridium sp.

NCBI tax ID(s): 1506 (species)

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General

@ref: 57912

BacDive-ID: 152889

keywords: Bacteria, anaerobe, mesophilic

description: Clostridium sp. CCUG 47909 is an anaerobe, mesophilic bacterium that was isolated from Industry.

NCBI tax id

  • NCBI tax id: 1506
  • Matching level: species

doi: 10.13145/bacdive152889.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium sp.
  • full scientific name: Clostridium Prazmowski 1880 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Anaerobacter
    20215Inflabilis
    20215Tyzzerella
    20215Pseudoclostridium
    20215Lachnoclostridium

@ref: 57912

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Clostridiaceae

genus: Clostridium

species: Clostridium sp.

type strain: no

Culture and growth conditions

culture temp

  • @ref: 57912
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 57912
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838027897tryptophan+energy source
6838017632nitrate-reduction
6838016634raffinose-fermentation
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838029985L-glutamate+degradation
6838016024D-mannose-fermentation

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68380tyrosine arylamidase-
68380L-arginine arylamidase-
68380tryptophan deaminase+4.1.99.1
68380alpha-fucosidase+3.2.1.51
68380glutamate decarboxylase+4.1.1.15
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380pyrrolidonyl arylamidase+3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase+3.4.11.5
68380alkaline phosphatase+3.1.3.1
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57912C12:02.312
    57912C13:01.913
    57912C14:07.914
    57912C15:02.515
    57912C16:019.716
    57912C17:0417
    57912C18:010.218
    57912C12:0 ISO0.511.608
    57912C13:0 ANTEISO1.412.701
    57912C13:0 iso4.312.612
    57912C14:0 ISO0.913.618
    57912C15:0 ANTEISO1.214.711
    57912C15:0 ISO5.214.621
    57912C16:0 aldehyde214.949
    57912C16:0 iso0.815.626
    57912C17:0 anteiso0.416.722
    57912C17:0 iso116.629
    57912C17:1 ISO I/C16:0 DMA8.616.481
    57912C18:0 3OH0.619.551
    57912C18:1 ISO H1.417.46
    57912C18:1 ω9c5.817.769
    57912C18:2 ω6,9c/C18:0 ANTE12.217.724
    57912C19:0 CYCLO ω9c3.218.87
    57912C19:1 ISO I1.718.473
    57912Unidentified0.4
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
57912-+++------++--------

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
57912---+-+------++-++-+---+------

Isolation, sampling and environmental information

isolation

  • @ref: 57912
  • sample type: Industry
  • sampling date: 2003-06-01
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Industrial

External links

@ref: 57912

culture collection no.: CCUG 47909

straininfo link

  • @ref: 106783
  • straininfo: 111207

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
57912Curators of the CCUGhttps://www.ccug.se/strain?id=47909Culture Collection University of Gothenburg (CCUG) (CCUG 47909)
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
106783Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID111207.1