Strain identifier

BacDive ID: 152858

Type strain: Yes

Species: Porphyromonas crevioricanis

Strain history: M. Hirasawa NUM 402.

NCBI tax ID(s): 1305617 (strain), 393921 (species)

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General

@ref: 57876

BacDive-ID: 152858

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative

description: Porphyromonas crevioricanis CCUG 47794 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from Dog,beagle,gingival crevicular fluid.

NCBI tax id

NCBI tax idMatching level
393921species
1305617strain

strain history

  • @ref: 67770
  • history: M. Hirasawa NUM 402.

doi: 10.13145/bacdive152858.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Porphyromonadaceae
  • genus: Porphyromonas
  • species: Porphyromonas crevioricanis
  • full scientific name: Porphyromonas crevioricanis Hirasawa and Takada 1994

  • synonyms

    • @ref: 20215
    • synonym: Porphyromonas cansulci

@ref: 57876

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Porphyromonadaceae

genus: Porphyromonas

species: Porphyromonas crevioricanis

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.993

colony morphology

  • @ref: 57876
  • incubation period: 3 days

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
57876anaerobe
69480anaerobe99.684

spore formation

@refspore formationconfidence
69480no100
69481no100

observation

  • @ref: 67770
  • observation: quinones: MK-9, MK-10

Isolation, sampling and environmental information

isolation

@refsample typesampling date
57876Dog,beagle,gingival crevicular fluid1993
67770Gingival crevicular fluids obtained from beagle

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Canidae (Dog)
#Host Body Product#Fluids

taxonmaps

  • @ref: 69479
  • File name: preview.99_2334.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_312;96_1260;97_1495;98_1821;99_2334&stattab=map
  • Last taxonomy: Porphyromonas crevioricanis subclade
  • 16S sequence: AB430829
  • Sequence Identity:
  • Total samples: 5285
  • soil counts: 129
  • aquatic counts: 75
  • animal counts: 5055
  • plant counts: 26

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Porphyromonas crevioricanis gene for 16S rRNA, partial sequence, strain: ATCC 55563AB4308291430ena393921
67770Porphyromonas crevioricanis gene for 16S ribosomal RNA, partial sequence, strain: JCM 15906AB5476581492ena393921

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Porphyromonas crevioricanis JCM 159061305617.3wgspatric1305617
66792Porphyromonas crevioricanis strain ATCC 55563393921.10wgspatric393921
66792Porphyromonas crevioricanis JCM 159062606217151draftimg1305617
66792Porphyromonas crevioricanis ATCC 555632585428092draftimg393921
67770Porphyromonas crevioricanis JCM 15906GCA_000509245contigncbi1305617
67770Porphyromonas crevioricanis ATCC 55563GCA_900167225scaffoldncbi393921

GC content

@refGC-contentmethod
6777045.9high performance liquid chromatography (HPLC)
6777044-45high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.83no
gram-positiveno97.831no
anaerobicyes99.162yes
halophileno82.383no
spore-formingno96.328no
thermophileno97.634yes
glucose-utilyes72.88no
flagellatedno97.545no
aerobicno97.504yes
glucose-fermentno55.61no

External links

@ref: 57876

culture collection no.: CCUG 47794, ATCC 55563, JCM 15906

straininfo link

  • @ref: 106759
  • straininfo: 46942

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22467157Porphyromonas crevioricanis is an earlier heterotypic synonym of Porphyromonas cansulci and has priority.Sakamoto M, Ohkuma MInt J Syst Evol Microbiol10.1099/ijs.0.042531-02012Bacterial Typing Techniques, Chaperonin 60/genetics, DNA, Bacterial/genetics, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Porphyromonas/*classification/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Genetics23887912Draft Genome Sequences of Porphyromonas crevioricanis JCM 15906T and Porphyromonas cansulci JCM 13913T Isolated from a Canine Oral Cavity.Sakamoto M, Tanaka N, Shiwa Y, Yoshikawa H, Ohkuma MGenome Announc10.1128/genomeA.00483-132013Phylogeny

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
57876Curators of the CCUGhttps://www.ccug.se/strain?id=47794Culture Collection University of Gothenburg (CCUG) (CCUG 47794)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
106759Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID46942.1