Strain identifier

BacDive ID: 15282

Type strain: Yes

Species: Streptomyces griseoviridis

Strain Designation: P-D 04955

Strain history: KCC S-0250 <-- NRRL 2427 <-- L. E. Anderson P-D 04955 (A-9071).

NCBI tax ID(s): 45398 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 9390

BacDive-ID: 15282

DSM-Number: 40229

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Streptomyces griseoviridis P-D 04955 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 45398
  • Matching level: species

strain history

@refhistory
9390<- E.B. Shirling, ISP <- L.E. Anderson, P-D 04955
67770KCC S-0250 <-- NRRL 2427 <-- L. E. Anderson P-D 04955 (A-9071).

doi: 10.13145/bacdive15282.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces griseoviridis
  • full scientific name: Streptomyces griseoviridis corrig. Anderson et al. 1956 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Streptomyces griseoviridus

@ref: 9390

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces griseoviridis

full scientific name: Streptomyces griseoviridis Anderson et al. 1956

strain designation: P-D 04955

type strain: yes

Morphology

multimedia

  • @ref: 9390
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40229.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9390GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9390ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
9390positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
9390etamycin
9390griseoviridin
9390viridogrisein

metabolite production

@refmetaboliteproduction
67770griseoviridinyes
67770viridogriseinyes

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
9390soilTexasUSAUSANorth America
67770Soil, oatfieldnear Hale Center, TXUSAUSANorth America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9390
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces griseoviridis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4643D44283120ena45398
20218Streptomyces griseoviridis strain KCTC 9780 16S ribosomal RNA gene, partial sequenceAY9998071419ena45398
20218Streptomyces griseoviridis gene for 16S rRNA, partial sequence, strain: NBRC 12874AB1842101471ena45398

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces griseoviridis strain JCM 425045398.11wgspatric45398
66792Streptomyces griseoviridis DSM 402292923575836draftimg45398
66792Streptomyces griseoviridis NRRL 24272582581671draftimg45398

GC content

  • @ref: 67770
  • GC-content: 67
  • method: fluorimetric

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveyes88.899no
anaerobicno99.026no
halophileno94.195no
spore-formingyes95.745no
glucose-utilyes89.564no
aerobicyes94.26no
flagellatedno97.651no
thermophileno97.108yes
motileno93.853no
glucose-fermentno87.946no

External links

@ref: 9390

culture collection no.: DSM 40229, ATCC 23920, CBS 904.68, IFO 12874, ISP 5229, JCM 4250, JCM 4643, NBRC 12874, NRRL 2427, RIA 1170, BCRC 15101, CGMCC 4.1418, HAMBI 1086, KCTC 9780, LMG 19321, NCIMB 9853, VKM Ac-622

straininfo link

  • @ref: 84376
  • straininfo: 13339

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Biotechnology468734Controlled biosynthesis of neoviridogriseins, new homologues of viridogrisein II. Production, biological properties and structure of neoviridogrisein II.Okumura Y, Takei T, Sakamoto M, Ishikura T, Fukagawa YJ Antibiot (Tokyo)10.7164/antibiotics.32.5841979Anti-Bacterial Agents/*biosynthesis/pharmacology, Chemical Phenomena, Chemistry, Drug Resistance, Microbial, Microbial Sensitivity Tests, Peptides, Cyclic/biosynthesis/pharmacology, Proline/analysis, Streptomyces/*metabolismMetabolism
Genetics11092967Structure of anionic carbohydrate-containing cell wall polymers in several representatives of the order actinomycetales.Kozlova YI, Streshinskaya GM, Shashkov AS, Evtushenko LI, Gavrish EY, Naumova IBBiochemistry (Mosc)BCM651014322000Actinomycetales/*chemistry/classification, Biopolymers/*chemistry, Carbohydrate Sequence, Carbohydrates/chemistry, Cell Wall/*chemistry, Magnetic Resonance Spectroscopy, Molecular Sequence Data, Streptomyces/chemistry, Teichoic Acids/*chemistryPhylogeny
Phylogeny19196762Streptomyces alni sp. nov., a daidzein-producing endophyte isolated from a root of Alnus nepalensis D. Don.Liu N, Wang H, Liu M, Gu Q, Zheng W, Huang YInt J Syst Evol Microbiol10.1099/ijs.0.65769-02009Alnus/*microbiology, Isoflavones/*metabolism, Molecular Sequence Data, Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Species Specificity, Streptomyces/*classification/genetics/isolation & purification/*physiologyGenetics
Phylogeny20400670Streptomyces zinciresistens sp. nov., a zinc-resistant actinomycete isolated from soil from a copper and zinc mine.Lin YB, Wang XY, Li HF, Wang NN, Wang HX, Tang M, Wei GHInt J Syst Evol Microbiol10.1099/ijs.0.024018-02010Anti-Bacterial Agents/*toxicity, Bacterial Typing Techniques, China, Cluster Analysis, Copper, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Drug Resistance, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolism, Zinc/*toxicityGenetics
Metabolism28380253Structural analysis of SgvP involved in carbon-sulfur bond formation during griseoviridin biosynthesis.Li Q, Chen Y, Zhang G, Zhang HFEBS Lett10.1002/1873-3468.126432017Amino Acid Sequence, Bacterial Proteins/*chemistry/genetics/metabolism, Biocatalysis, Carbon/*chemistry/metabolism, Catalytic Domain, Crystallography, X-Ray, Cytochrome P-450 Enzyme System/chemistry/metabolism, Models, Molecular, Molecular Structure, Oxygen/chemistry/metabolism, Peptides/*chemistry/metabolism, Proline/chemistry/metabolism, Protein Conformation, Sequence Homology, Amino Acid, Spectrophotometry, Streptomyces/genetics/metabolism, Substrate Specificity, Sulfur/*chemistry/metabolism
Metabolism29065880Identification and utilization of two important transporters: SgvT1 and SgvT2, for griseoviridin and viridogrisein biosynthesis in Streptomyces griseoviridis.Xie Y, Ma J, Qin X, Li Q, Ju JMicrob Cell Fact10.1186/s12934-017-0792-82017ATP-Binding Cassette Transporters/genetics, Anti-Bacterial Agents/*metabolism, Biosynthetic Pathways/genetics, Gene Expression Regulation, Bacterial, Macrolides/*metabolism, Membrane Transport Proteins/*genetics/isolation & purification, Multigene Family, Peptides/*metabolism, Streptomyces/*metabolismEnzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9390Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40229)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40229
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
84376Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13339.1StrainInfo: A central database for resolving microbial strain identifiers