Strain identifier
BacDive ID: 15282
Type strain:
Species: Streptomyces griseoviridis
Strain Designation: P-D 04955
Strain history: KCC S-0250 <-- NRRL 2427 <-- L. E. Anderson P-D 04955 (A-9071).
NCBI tax ID(s): 45398 (species)
General
@ref: 9390
BacDive-ID: 15282
DSM-Number: 40229
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production
description: Streptomyces griseoviridis P-D 04955 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
- NCBI tax id: 45398
- Matching level: species
strain history
@ref | history |
---|---|
9390 | <- E.B. Shirling, ISP <- L.E. Anderson, P-D 04955 |
67770 | KCC S-0250 <-- NRRL 2427 <-- L. E. Anderson P-D 04955 (A-9071). |
doi: 10.13145/bacdive15282.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces griseoviridis
- full scientific name: Streptomyces griseoviridis corrig. Anderson et al. 1956 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Streptomyces griseoviridus
@ref: 9390
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces griseoviridis
full scientific name: Streptomyces griseoviridis Anderson et al. 1956
strain designation: P-D 04955
type strain: yes
Morphology
multimedia
- @ref: 9390
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40229.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9390 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
9390 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
9390 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
@ref | compound |
---|---|
9390 | etamycin |
9390 | griseoviridin |
9390 | viridogrisein |
metabolite production
@ref | metabolite | production |
---|---|---|
67770 | griseoviridin | yes |
67770 | viridogrisein | yes |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
9390 | soil | Texas | USA | USA | North America |
67770 | Soil, oatfield | near Hale Center, TX | USA | USA | North America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 9390
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces griseoviridis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4643 | D44283 | 120 | ena | 45398 |
20218 | Streptomyces griseoviridis strain KCTC 9780 16S ribosomal RNA gene, partial sequence | AY999807 | 1419 | ena | 45398 |
20218 | Streptomyces griseoviridis gene for 16S rRNA, partial sequence, strain: NBRC 12874 | AB184210 | 1471 | ena | 45398 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces griseoviridis strain JCM 4250 | 45398.11 | wgs | patric | 45398 |
66792 | Streptomyces griseoviridis DSM 40229 | 2923575836 | draft | img | 45398 |
66792 | Streptomyces griseoviridis NRRL 2427 | 2582581671 | draft | img | 45398 |
GC content
- @ref: 67770
- GC-content: 67
- method: fluorimetric
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
gram-positive | yes | 88.899 | no |
anaerobic | no | 99.026 | no |
halophile | no | 94.195 | no |
spore-forming | yes | 95.745 | no |
glucose-util | yes | 89.564 | no |
aerobic | yes | 94.26 | no |
flagellated | no | 97.651 | no |
thermophile | no | 97.108 | yes |
motile | no | 93.853 | no |
glucose-ferment | no | 87.946 | no |
External links
@ref: 9390
culture collection no.: DSM 40229, ATCC 23920, CBS 904.68, IFO 12874, ISP 5229, JCM 4250, JCM 4643, NBRC 12874, NRRL 2427, RIA 1170, BCRC 15101, CGMCC 4.1418, HAMBI 1086, KCTC 9780, LMG 19321, NCIMB 9853, VKM Ac-622
straininfo link
- @ref: 84376
- straininfo: 13339
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Biotechnology | 468734 | Controlled biosynthesis of neoviridogriseins, new homologues of viridogrisein II. Production, biological properties and structure of neoviridogrisein II. | Okumura Y, Takei T, Sakamoto M, Ishikura T, Fukagawa Y | J Antibiot (Tokyo) | 10.7164/antibiotics.32.584 | 1979 | Anti-Bacterial Agents/*biosynthesis/pharmacology, Chemical Phenomena, Chemistry, Drug Resistance, Microbial, Microbial Sensitivity Tests, Peptides, Cyclic/biosynthesis/pharmacology, Proline/analysis, Streptomyces/*metabolism | Metabolism |
Genetics | 11092967 | Structure of anionic carbohydrate-containing cell wall polymers in several representatives of the order actinomycetales. | Kozlova YI, Streshinskaya GM, Shashkov AS, Evtushenko LI, Gavrish EY, Naumova IB | Biochemistry (Mosc) | BCM65101432 | 2000 | Actinomycetales/*chemistry/classification, Biopolymers/*chemistry, Carbohydrate Sequence, Carbohydrates/chemistry, Cell Wall/*chemistry, Magnetic Resonance Spectroscopy, Molecular Sequence Data, Streptomyces/chemistry, Teichoic Acids/*chemistry | Phylogeny |
Phylogeny | 19196762 | Streptomyces alni sp. nov., a daidzein-producing endophyte isolated from a root of Alnus nepalensis D. Don. | Liu N, Wang H, Liu M, Gu Q, Zheng W, Huang Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.65769-0 | 2009 | Alnus/*microbiology, Isoflavones/*metabolism, Molecular Sequence Data, Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Species Specificity, Streptomyces/*classification/genetics/isolation & purification/*physiology | Genetics |
Phylogeny | 20400670 | Streptomyces zinciresistens sp. nov., a zinc-resistant actinomycete isolated from soil from a copper and zinc mine. | Lin YB, Wang XY, Li HF, Wang NN, Wang HX, Tang M, Wei GH | Int J Syst Evol Microbiol | 10.1099/ijs.0.024018-0 | 2010 | Anti-Bacterial Agents/*toxicity, Bacterial Typing Techniques, China, Cluster Analysis, Copper, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Drug Resistance, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolism, Zinc/*toxicity | Genetics |
Metabolism | 28380253 | Structural analysis of SgvP involved in carbon-sulfur bond formation during griseoviridin biosynthesis. | Li Q, Chen Y, Zhang G, Zhang H | FEBS Lett | 10.1002/1873-3468.12643 | 2017 | Amino Acid Sequence, Bacterial Proteins/*chemistry/genetics/metabolism, Biocatalysis, Carbon/*chemistry/metabolism, Catalytic Domain, Crystallography, X-Ray, Cytochrome P-450 Enzyme System/chemistry/metabolism, Models, Molecular, Molecular Structure, Oxygen/chemistry/metabolism, Peptides/*chemistry/metabolism, Proline/chemistry/metabolism, Protein Conformation, Sequence Homology, Amino Acid, Spectrophotometry, Streptomyces/genetics/metabolism, Substrate Specificity, Sulfur/*chemistry/metabolism | |
Metabolism | 29065880 | Identification and utilization of two important transporters: SgvT1 and SgvT2, for griseoviridin and viridogrisein biosynthesis in Streptomyces griseoviridis. | Xie Y, Ma J, Qin X, Li Q, Ju J | Microb Cell Fact | 10.1186/s12934-017-0792-8 | 2017 | ATP-Binding Cassette Transporters/genetics, Anti-Bacterial Agents/*metabolism, Biosynthetic Pathways/genetics, Gene Expression Regulation, Bacterial, Macrolides/*metabolism, Membrane Transport Proteins/*genetics/isolation & purification, Multigene Family, Peptides/*metabolism, Streptomyces/*metabolism | Enzymology |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9390 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40229) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40229 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
84376 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13339.1 | StrainInfo: A central database for resolving microbial strain identifiers |