Strain identifier

BacDive ID: 152753

Type strain: No

Species: Empedobacter sp.

NCBI tax ID(s): 1927715 (species)

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General

@ref: 57747

BacDive-ID: 152753

keywords: Bacteria, aerobe, mesophilic

description: Empedobacter sp. CCUG 47551 is an aerobe, mesophilic bacterium that was isolated from Human blood,81-yr-old woman.

NCBI tax id

  • NCBI tax id: 1927715
  • Matching level: species

doi: 10.13145/bacdive152753.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Empedobacter
  • species: Empedobacter sp.
  • full scientific name: Empedobacter (ex Prévot 1961) Vandamme et al. 1994

  • synonyms

    • @ref: 20215
    • synonym: Wautersiella

@ref: 57747

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Empedobacter

species: Empedobacter sp.

type strain: no

Culture and growth conditions

culture temp

  • @ref: 57747
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 57747
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan+energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57747C14:0214
    57747C15:00.515
    57747C16:07.716
    57747C18:00.518
    57747C13:0 3OH/C15:1 i I/H1.214.469
    57747C13:0 iso0.412.612
    57747C14:0 2OH0.515.205
    57747C14:1 ω5c0.713.899
    57747C15:0 ISO27.714.621
    57747C15:0 ISO 3OH3.716.135
    57747C15:1 ω6c0.714.856
    57747C16:0 3OH3.117.52
    57747C16:1 ω5c6.815.908
    57747C16:1 ω7c16.815.819
    57747C17:0 iso1.616.629
    57747C17:0 iso 3OH11.618.161
    57747C17:1 ISO I/C16:0 DMA4.716.481
    57747C17:1 ω9c ISO1.916.416
    57747C18:2 ω6,9c/C18:0 ANTE0.717.724
    57747Unidentified1.112.946
    57747unknown 13.5665.613.566
    57747unknown 16.5800.516.58
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
57747-+++-+++++++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
57747-+----+-+-+--+-----++

Isolation, sampling and environmental information

isolation

  • @ref: 57747
  • sample type: Human blood,81-yr-old woman
  • sampling date: 2003-03-01
  • geographic location: Herning
  • country: Denmark
  • origin.country: DNK
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Host Body Product#Fluids#Blood
#Infection#Patient

External links

@ref: 57747

culture collection no.: CCUG 47551

straininfo link

  • @ref: 106663
  • straininfo: 111081

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
57747Curators of the CCUGhttps://www.ccug.se/strain?id=47551Culture Collection University of Gothenburg (CCUG) (CCUG 47551)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
106663Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID111081.1