Strain identifier

BacDive ID: 15268

Type strain: Yes

Species: Streptomyces griseoloalbus

Strain history: KCC S-0480 <-- IFO 13046 <-- SAJ <-- ISP 5468 <-- INA 1875/54.

NCBI tax ID(s): 67303 (species)

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General

@ref: 9563

BacDive-ID: 15268

DSM-Number: 40468

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Streptomyces griseoloalbus DSM 40468 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 67303
  • Matching level: species

strain history

@refhistory
9563<- E.B. Shirling, ISP <- G.F. Gauze, INA
67770KCC S-0480 <-- IFO 13046 <-- SAJ <-- ISP 5468 <-- INA 1875/54.

doi: 10.13145/bacdive15268.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces griseoloalbus
  • full scientific name: Streptomyces griseoloalbus (Kudrina 1957) Pridham et al. 1958 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces griseoloalbus

@ref: 9563

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces griseoloalbus

full scientific name: Streptomyces griseoloalbus (Kudrina 1957) Pridham et al. 1958

type strain: yes

Morphology

multimedia

  • @ref: 9563
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40468.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 9563
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18596positiveoptimum28mesophilic
9563positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

  • @ref: 9563
  • compound: grisein (albomycin-like antibiotic)

halophily

  • @ref: 18596
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1859617234glucose+
1859622599arabinose+
1859617992sucrose-
1859618222xylose+
1859617268myo-inositol+
1859629864mannitol+
1859628757fructose+
1859626546rhamnose+
1859616634raffinose+
1859662968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase+4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18596-------+--+

Isolation, sampling and environmental information

isolation

@refsample type
9563soil
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185961German classification
95631Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces griseoloalbus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4480D44175121ena67303
20218Streptomyces griseoloalbus gene for 16S rRNA, partial sequence, strain: NBRC 13046AB1842751480ena67303
20218Streptomyces griseoloalbus strain NRRL B-12383T 16S ribosomal RNA gene, partial sequenceDQ4425031567ena67303

Genome sequences

  • @ref: 66792
  • description: Streptomyces griseoloalbus strain JCM 4480
  • accession: 67303.3
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 67303

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveyes88.884no
anaerobicno98.936no
halophileno92.44no
spore-formingyes95.656no
glucose-utilyes89.397yes
thermophileno98.056yes
flagellatedno98.023no
motileno93.923no
aerobicyes93.858no
glucose-fermentno89.338no

External links

@ref: 9563

culture collection no.: DSM 40468, ATCC 23624, ATCC 25458, CBS 691.69, CGMCC AS 4.1383, IFO 13046, INA 1875/54, ISP 5468, NBRC 13046, RIA 1238, JCM 4480, BCRC 16207, CGMCC 4.1383, NRRL B-12383, VKM Ac-1739

straininfo link

  • @ref: 84363
  • straininfo: 92743

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9563Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40468)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40468
18596Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40468.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
84363Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92743.1StrainInfo: A central database for resolving microbial strain identifiers