Strain identifier
BacDive ID: 15255
Type strain:
Species: Streptomyces diastaticus
Strain Designation: Duché
Strain history: KCC S-0136 <-- R. Shinobu T-13 <-- IFO 3198 <-- CBS 422.34 <-- J. Duché.
NCBI tax ID(s): 53448 (species)
General
@ref: 9462
BacDive-ID: 15255
DSM-Number: 40324
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Streptomyces diastaticus Duché is a spore-forming, mesophilic, Gram-positive bacterium that builds an aerial mycelium.
NCBI tax id
- NCBI tax id: 53448
- Matching level: species
strain history
@ref | history |
---|---|
9462 | <- E.B. Shirling, ISP <- CBS |
67770 | KCC S-0136 <-- R. Shinobu T-13 <-- IFO 3198 <-- CBS 422.34 <-- J. Duché. |
doi: 10.13145/bacdive15255.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces diastaticus
- full scientific name: Streptomyces diastaticus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)
synonyms
@ref synonym 20215 Actinomyces diastaticus 20215 Actinomyces rutgersensis 20215 Actinomyces gougeroti 20215 Streptomyces gougerotii 20215 Streptomyces rutgersensis
@ref: 9462
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces gougerotii
full scientific name: Streptomyces diastaticus subsp. diastaticus (Krainsky 1914) Pridham et al. 1958
strain designation: Duché
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
19437 | Yellowish-brown | 10-14 days | ISP 2 |
19437 | White | 10-14 days | ISP 3 |
19437 | Yellow | 10-14 days | ISP 4 |
19437 | Yellow-brown | 10-14 days | ISP 5 |
multicellular morphology
@ref | forms multicellular complex | complex name | complex color | medium name |
---|---|---|---|---|
19437 | yes | Aerial Mycelium | Yellow/Reddish | ISP 2 |
19437 | yes | Aerial Mycelium | White | ISP 3 |
19437 | yes | Aerial Mycelium | White | ISP 4 |
19437 | yes | Aerial Mycelium | ISP 5 |
multimedia
- @ref: 9462
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40324.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9462 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
9462 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
19437 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
19437 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
19437 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
19437 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
19437 | positive | optimum | 30 | mesophilic |
9462 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore description | spore formation | confidence |
---|---|---|---|
19437 | Formation of spore chains: rectiflixibilis, spore surface: smooth | yes | |
69481 | yes | 100 | |
69480 | yes | 100 |
compound production
@ref | compound |
---|---|
9462 | gougerotin |
20216 | Gougerotin |
halophily
- @ref: 19437
- salt: NaCl
- growth: positive
- tested relation: maximum
- concentration: 5 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
19437 | 62968 | cellulose | - | |
19437 | 16634 | raffinose | - | |
19437 | 26546 | rhamnose | - | |
19437 | 28757 | fructose | + | |
19437 | 29864 | mannitol | + | |
19437 | 17268 | myo-inositol | - | |
19437 | 18222 | xylose | - | |
19437 | 17992 | sucrose | - | |
19437 | 22599 | arabinose | - | |
19437 | 17234 | glucose | + | |
68368 | 5291 | gelatin | + | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | + | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | gelatinase | + | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
19437 | - | - | - | - | + | - | + | - | - | + | + |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
9462 | 1 | Risk group (German classification) |
19437 | 1 | Risk group (German classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | S.gougerotii (DSM 40324T) 16S rRNA gene | Z76687 | 1476 | ena | 53448 |
20218 | Streptomyces gougerotii gene for 16S ribosomal RNA, partial sequence, strain: JCM 4478 | D44173 | 120 | ena | 53448 |
20218 | Streptomyces gougerotii gene for 16S rRNA, partial sequence, strain: NBRC 13043 | AB249982 | 1452 | ena | 53448 |
9462 | Streptomyces gougerotii gene for 16S rRNA, partial sequence, strain: NBRC 3198 | AB184742 | 1478 | ena | 53448 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces gougerotii JCM 4136 | GCA_014648955 | contig | ncbi | 53448 |
66792 | Streptomyces gougerotii strain JCM 4136 | 53448.4 | wgs | patric | 53448 |
66792 | Streptomyces gougerotii strain NBRC 13043 | 53448.3 | wgs | patric | 53448 |
67770 | Streptomyces gougerotii NBRC 13043 | GCA_011170145 | contig | ncbi | 53448 |
GC content
@ref | GC-content | method |
---|---|---|
67770 | 71 | fluorimetric |
67770 | 73.6 | genome sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
gram-positive | yes | 91.989 | no |
anaerobic | no | 99.408 | no |
halophile | no | 91.772 | no |
spore-forming | yes | 94.478 | no |
glucose-util | yes | 89.193 | no |
thermophile | no | 97.623 | yes |
aerobic | yes | 94.304 | no |
motile | no | 96.013 | no |
glucose-ferment | no | 88.792 | no |
flagellated | no | 97.787 | no |
External links
@ref: 9462
culture collection no.: DSM 40324, AS 4.1854, ATCC 10975, ATCC 25455, CBS 422.34, CBS 688.69, ETH 10213, IFO 13043, IFO 3198, IMRU 3590, ISP 5324, JCM 4136, JCM 4478, KCC S-0136, KCC S-0478, NBRC 13043, NBRC 3198, PSA 224, BCRC 12105, CGMCC 4.1854, CGMCC 4.1885, CGMCC 4.2081, IMET 40289, NRRL B-1344, NRRL B-1903, RIA 1235, VKM Ac-713
literature
- topic: Phylogeny
- Pubmed-ID: 24002610
- title: Streptomyces polyrhachii sp. nov., a novel actinomycete isolated from an edible Chinese black ant (Polyrhachis vicina Roger).
- authors: Yu C, Liu C, Wang X, Zhao J, Yang L, Gao R, Zhang Y, Xiang W
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-013-0021-3
- year: 2013
- mesh: Animals, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Hymenoptera/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/*isolation & purification/metabolism
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9462 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40324) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40324 | |||
19437 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM40324.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20216 | Curators of the HKI | http://www.leibniz-hki.de/de/ | Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 |