Strain identifier

BacDive ID: 152434

Type strain: No

Species: Histophilus somni

NCBI tax ID(s): 731 (species)

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General

@ref: 57341

BacDive-ID: 152434

keywords: Bacteria, microaerophile, mesophilic

description: Histophilus somni CCUG 46774 is a microaerophile, mesophilic bacterium that was isolated from Bovine brain,diseased animal.

NCBI tax id

  • NCBI tax id: 731
  • Matching level: species

doi: 10.13145/bacdive152434.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Histophilus
  • species: Histophilus somni
  • full scientific name: Histophilus somni Angen et al. 2003

@ref: 57341

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Histophilus

species: Histophilus somni

type strain: no

Culture and growth conditions

culture temp

  • @ref: 57341
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 57341
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837717992sucrose+builds acid from
6837718257ornithine+degradation
6837716199urea-hydrolysis
6837727897tryptophan+energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68377tryptophan deaminase+4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase+4.1.1.17
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57341C12:03.812
    57341C14:09.114
    57341C16:033.116
    57341C18:01.718
    57341C13:0 ISO 2OH0.413.814
    57341C14:0 3OH/C16:1 ISO I6.115.485
    57341C16:1 ω5c0.315.908
    57341C16:1 ω7c35.715.819
    57341C18:1 ω7c /12t/9t4.217.824
    57341C18:1 ω9c1.317.769
    57341C18:2 ω6,9c/C18:0 ANTE2.617.724
    57341Unidentified110.912
    57341Unidentified0.215.177
    57341unknown 14.5030.514.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
57341-----+--------+-----

API NH

@refGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
57341+++++------+

Isolation, sampling and environmental information

isolation

  • @ref: 57341
  • sample type: Bovine brain,diseased animal
  • country: Canada
  • origin.country: CAN
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Organ#Brain

External links

@ref: 57341

culture collection no.: CCUG 46774, MCCM 03029

straininfo link

  • @ref: 106400
  • straininfo: 97632

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
57341Curators of the CCUGhttps://www.ccug.se/strain?id=46774Culture Collection University of Gothenburg (CCUG) (CCUG 46774)
68377Automatically annotated from API NH
68382Automatically annotated from API zym
106400Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID97632.1