Strain identifier
version 8.1 (current version)
General
@ref: 57341
BacDive-ID: 152434
keywords: Bacteria, microaerophile, mesophilic
description: Histophilus somni CCUG 46774 is a microaerophile, mesophilic bacterium that was isolated from Bovine brain,diseased animal.
NCBI tax id
- NCBI tax id: 731
- Matching level: species
doi: 10.13145/bacdive152434.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Histophilus
- species: Histophilus somni
- full scientific name: Histophilus somni Angen et al. 2003
@ref: 57341
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Histophilus
species: Histophilus somni
type strain: no
Culture and growth conditions
culture temp
- @ref: 57341
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 57341
- oxygen tolerance: microaerophile
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68377 | 17634 | D-glucose | + | builds acid from |
68377 | 15824 | D-fructose | + | builds acid from |
68377 | 17306 | maltose | + | builds acid from |
68377 | 17992 | sucrose | + | builds acid from |
68377 | 18257 | ornithine | + | degradation |
68377 | 16199 | urea | - | hydrolysis |
68377 | 27897 | tryptophan | + | energy source |
metabolite production
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
68377 | tryptophan deaminase | + | 4.1.99.1 |
68377 | gamma-glutamyltransferase | - | 2.3.2.2 |
68377 | proline-arylamidase | - | 3.4.11.5 |
68377 | beta-galactosidase | - | 3.2.1.23 |
68377 | alkaline phosphatase | - | 3.1.3.1 |
68377 | lipase | - | |
68377 | urease | - | 3.5.1.5 |
68377 | ornithine decarboxylase | + | 4.1.1.17 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | + | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 57341 C12:0 3.8 12 57341 C14:0 9.1 14 57341 C16:0 33.1 16 57341 C18:0 1.7 18 57341 C13:0 ISO 2OH 0.4 13.814 57341 C14:0 3OH/C16:1 ISO I 6.1 15.485 57341 C16:1 ω5c 0.3 15.908 57341 C16:1 ω7c 35.7 15.819 57341 C18:1 ω7c /12t/9t 4.2 17.824 57341 C18:1 ω9c 1.3 17.769 57341 C18:2 ω6,9c/C18:0 ANTE 2.6 17.724 57341 Unidentified 1 10.912 57341 Unidentified 0.2 15.177 57341 unknown 14.503 0.5 14.503 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
57341 | - | - | - | - | - | + | - | - | - | - | - | - | - | - | + | - | - | - | - | - |
API NH
@ref | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|
57341 | + | + | + | + | + | - | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 57341
- sample type: Bovine brain,diseased animal
- country: Canada
- origin.country: CAN
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Bovinae (Cow, Cattle) |
#Host Body-Site | #Organ | #Brain |
External links
@ref: 57341
culture collection no.: CCUG 46774, MCCM 03029
straininfo link
- @ref: 106400
- straininfo: 97632
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
57341 | Curators of the CCUG | https://www.ccug.se/strain?id=46774 | Culture Collection University of Gothenburg (CCUG) (CCUG 46774) | |
68377 | Automatically annotated from API NH | |||
68382 | Automatically annotated from API zym | |||
106400 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID97632.1 |