Strain identifier

BacDive ID: 152249

Type strain: No

Species: Nocardia farcinica

NCBI tax ID(s): 37329 (species)

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General

@ref: 57109

BacDive-ID: 152249

keywords: Bacteria, microaerophile, mesophilic

description: Nocardia farcinica CCUG 46208 is a microaerophile, mesophilic bacterium that was isolated from Human bronchial alveolar lavage,abscess.

NCBI tax id

  • NCBI tax id: 37329
  • Matching level: species

doi: 10.13145/bacdive152249.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia farcinica
  • full scientific name: Nocardia farcinica Trevisan 1889 (Approved Lists 1980)

@ref: 57109

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Nocardia

species: Nocardia farcinica

type strain: no

Culture and growth conditions

culture temp

  • @ref: 57109
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 57109
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837928087glycogen-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837916899D-mannitol-fermentation
6837965327D-xylose-fermentation
6837917634D-glucose-fermentation
683795291gelatin-hydrolysis
6837916199urea+hydrolysis
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837917992sucrose-fermentation
6837916988D-ribose-fermentation

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382acid phosphatase+3.1.3.2
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase+3.4.11.3
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
68379urease+3.5.1.5
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379catalase+1.11.1.6
68379gelatinase-
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase+3.5.1.B15

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57109C14:02.114
    57109C16:031.216
    57109C18:04.918
    57109C16:1 ω7c0.815.819
    57109C16:1 ω7c/C15:0 ISO 2OH2015.85
    57109C18:1 ω9c9.717.769
    57109C18:2 ω6,9c/C18:0 ANTE717.724
    57109C19:1 ω11c/19:1 ω9c118.762
    57109C20:1 ω9c1.619.77
    57109C20:4 ω6,9,12,15c0.919.395
    57109TBSA 10Me18:013.518.392
    57109Unidentified2.9
    57109unknown 14.9664.514.966
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
57109-+++--+-++----------+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
57109-+-+-++++-++---++---

Isolation, sampling and environmental information

isolation

  • @ref: 57109
  • sample type: Human bronchial alveolar lavage,abscess
  • sampling date: 2002-02-01
  • geographic location: Umeå
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Lung
#Infection#Medical environment#Medical practice
#Infection#Patient

External links

@ref: 57109

culture collection no.: CCUG 46208

straininfo link

  • @ref: 106247
  • straininfo: 110619

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
57109Curators of the CCUGhttps://www.ccug.se/strain?id=46208Culture Collection University of Gothenburg (CCUG) (CCUG 46208)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
106247Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID110619.1