Strain identifier

BacDive ID: 152177

Type strain: No

Species: Clostridium cochlearium

NCBI tax ID(s): 1494 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 57012

BacDive-ID: 152177

keywords: Bacteria, anaerobe, mesophilic

description: Clostridium cochlearium CCUG 45978 is an anaerobe, mesophilic bacterium that was isolated from Industry,processed cheese.

NCBI tax id

  • NCBI tax id: 1494
  • Matching level: species

doi: 10.13145/bacdive152177.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium cochlearium
  • full scientific name: Clostridium cochlearium (Douglas et al. 1919) Bergey et al. 1923 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Clostridium lentoputrescens
    20215Bacillus cochlearius

@ref: 57012

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Clostridiaceae

genus: Clostridium

species: Clostridium cochlearium

type strain: no

Culture and growth conditions

culture temp

  • @ref: 57012
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 57012
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan+energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase+4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57012C12:02.312
    57012C14:021.914
    57012C16:01716
    57012C18:01.718
    57012C13:0 ISO 2OH4.913.814
    57012C13:1 at 12-131.412.931
    57012C16:1 ω7c11.615.819
    57012C16:1 ω7c DMA3.216.288
    57012C16:1 ω9c6.315.774
    57012C16:1 ω9c DMA1.516.242
    57012C17:0 anteiso1.716.722
    57012C17:1 ISO I/C16:0 DMA2.216.481
    57012C18:1 ω9c4.517.769
    57012C18:2 ω6,9c/C18:0 ANTE10.417.724
    57012Unidentified1.412.78
    57012unknown 13.7661.913.766
    57012unknown 14.776314.776
    57012unknown 18.1773.318.177
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
57012---------------++------------

Isolation, sampling and environmental information

isolation

  • @ref: 57012
  • sample type: Industry,processed cheese
  • sampling date: 2001-12-01
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Dairy product
#Engineered#Industrial

External links

@ref: 57012

culture collection no.: CCUG 45978

straininfo link

  • @ref: 106185
  • straininfo: 110552

literature

  • topic: Pathogenicity
  • Pubmed-ID: 17388069
  • title: Influence of long-chain polyphosphate and heat treatment on Clostridium cochlearium and Clostridium sporogenes isolated from processed cheese spread.
  • authors: Borch E, Lycken L
  • journal: J Food Prot
  • DOI: 10.4315/0362-028x-70.3.744
  • year: 2007
  • mesh: Cheese/*microbiology, Clostridium/*drug effects/growth & development, Colony Count, Microbial, Consumer Product Safety, Dose-Response Relationship, Drug, Food Contamination/*analysis, Food Preservation/*methods, *Hot Temperature, Humans, Polyphosphates/*pharmacology, Species Specificity, Spores, Bacterial/growth & development, Time Factors
  • topic2: Stress

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
57012Curators of the CCUGhttps://www.ccug.se/strain?id=45978Culture Collection University of Gothenburg (CCUG) (CCUG 45978)
68380Automatically annotated from API rID32A
106185Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID110552.1