Strain identifier
version 8.1 (current version)
General
@ref: 57012
BacDive-ID: 152177
keywords: Bacteria, anaerobe, mesophilic
description: Clostridium cochlearium CCUG 45978 is an anaerobe, mesophilic bacterium that was isolated from Industry,processed cheese.
NCBI tax id
- NCBI tax id: 1494
- Matching level: species
doi: 10.13145/bacdive152177.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium cochlearium
- full scientific name: Clostridium cochlearium (Douglas et al. 1919) Bergey et al. 1923 (Approved Lists 1980)
synonyms
@ref synonym 20215 Clostridium lentoputrescens 20215 Bacillus cochlearius
@ref: 57012
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Clostridium
species: Clostridium cochlearium
type strain: no
Culture and growth conditions
culture temp
- @ref: 57012
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 57012
- oxygen tolerance: anaerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68380 | 16199 | urea | - | hydrolysis |
68380 | 29016 | arginine | - | hydrolysis |
68380 | 16024 | D-mannose | - | fermentation |
68380 | 16634 | raffinose | - | fermentation |
68380 | 29985 | L-glutamate | - | degradation |
68380 | 17632 | nitrate | - | reduction |
68380 | 27897 | tryptophan | + | energy source |
metabolite production
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
68380 | serine arylamidase | - | |
68380 | glutamyl-glutamate arylamidase | - | |
68380 | histidine arylamidase | - | |
68380 | glycin arylamidase | - | |
68380 | alanine arylamidase | - | 3.4.11.2 |
68380 | tyrosine arylamidase | - | |
68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68380 | leucine arylamidase | - | 3.4.11.1 |
68380 | phenylalanine arylamidase | - | |
68380 | leucyl glycin arylamidase | - | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | L-arginine arylamidase | - | |
68380 | alkaline phosphatase | + | 3.1.3.1 |
68380 | tryptophan deaminase | + | 4.1.99.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | - | 3.2.1.21 |
68380 | alpha-glucosidase | - | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | - | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | arginine dihydrolase | - | 3.5.3.6 |
68380 | urease | - | 3.5.1.5 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 57012 C12:0 2.3 12 57012 C14:0 21.9 14 57012 C16:0 17 16 57012 C18:0 1.7 18 57012 C13:0 ISO 2OH 4.9 13.814 57012 C13:1 at 12-13 1.4 12.931 57012 C16:1 ω7c 11.6 15.819 57012 C16:1 ω7c DMA 3.2 16.288 57012 C16:1 ω9c 6.3 15.774 57012 C16:1 ω9c DMA 1.5 16.242 57012 C17:0 anteiso 1.7 16.722 57012 C17:1 ISO I/C16:0 DMA 2.2 16.481 57012 C18:1 ω9c 4.5 17.769 57012 C18:2 ω6,9c/C18:0 ANTE 10.4 17.724 57012 Unidentified 1.4 12.78 57012 unknown 13.766 1.9 13.766 57012 unknown 14.776 3 14.776 57012 unknown 18.177 3.3 18.177 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
57012 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 57012
- sample type: Industry,processed cheese
- sampling date: 2001-12-01
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | #Dairy product |
#Engineered | #Industrial |
External links
@ref: 57012
culture collection no.: CCUG 45978
straininfo link
- @ref: 106185
- straininfo: 110552
literature
- topic: Pathogenicity
- Pubmed-ID: 17388069
- title: Influence of long-chain polyphosphate and heat treatment on Clostridium cochlearium and Clostridium sporogenes isolated from processed cheese spread.
- authors: Borch E, Lycken L
- journal: J Food Prot
- DOI: 10.4315/0362-028x-70.3.744
- year: 2007
- mesh: Cheese/*microbiology, Clostridium/*drug effects/growth & development, Colony Count, Microbial, Consumer Product Safety, Dose-Response Relationship, Drug, Food Contamination/*analysis, Food Preservation/*methods, *Hot Temperature, Humans, Polyphosphates/*pharmacology, Species Specificity, Spores, Bacterial/growth & development, Time Factors
- topic2: Stress
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
57012 | Curators of the CCUG | https://www.ccug.se/strain?id=45978 | Culture Collection University of Gothenburg (CCUG) (CCUG 45978) | |
68380 | Automatically annotated from API rID32A | |||
106185 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID110552.1 |