Strain identifier
BacDive ID: 1517
Type strain:
Species: Terribacillus goriensis
Strain Designation: CL-GR16
Strain history: <- Byung C. Cho, CL-GR16
NCBI tax ID(s): 386490 (species)
General
@ref: 7460
BacDive-ID: 1517
DSM-Number: 18252
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped
description: Terribacillus goriensis CL-GR16 is an aerobe, spore-forming, mesophilic bacterium that was isolated from surface sea water.
NCBI tax id
- NCBI tax id: 386490
- Matching level: species
strain history
- @ref: 7460
- history: <- Byung C. Cho, CL-GR16
doi: 10.13145/bacdive1517.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Terribacillus
- species: Terribacillus goriensis
- full scientific name: Terribacillus goriensis (Kim et al. 2007) Krishnamurthi and Chakrabarti 2009
synonyms
- @ref: 20215
- synonym: Pelagibacillus goriensis
@ref: 7460
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Terribacillus
species: Terribacillus goriensis
full scientific name: Terribacillus goriensis (Kim et al. 2007) Krishnamurthi and Chakrabarti 2009
strain designation: CL-GR16
type strain: yes
Morphology
cell morphology
- @ref: 32019
- gram stain: positive
- cell length: 1.75 µm
- cell width: 0.55 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
- @ref: 7460
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7460 | positive | growth | 30 | mesophilic |
32019 | positive | growth | 15-43 | |
32019 | positive | optimum | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
32019 | positive | growth | 5.5-9.0 | alkaliphile |
32019 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 32019
- oxygen tolerance: aerobe
spore formation
- @ref: 32019
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
32019 | NaCl | positive | growth | 0.0-14 % |
32019 | NaCl | positive | optimum | 1 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
32019 | 17057 | cellobiose | + | carbon source |
32019 | 16947 | citrate | + | carbon source |
32019 | 28757 | fructose | + | carbon source |
32019 | 28260 | galactose | + | carbon source |
32019 | 17234 | glucose | + | carbon source |
32019 | 17716 | lactose | + | carbon source |
32019 | 29864 | mannitol | + | carbon source |
32019 | 37684 | mannose | + | carbon source |
32019 | 28053 | melibiose | + | carbon source |
32019 | 506227 | N-acetylglucosamine | + | carbon source |
32019 | 15361 | pyruvate | + | carbon source |
32019 | 26546 | rhamnose | + | carbon source |
32019 | 17814 | salicin | + | carbon source |
32019 | 17992 | sucrose | + | carbon source |
32019 | 27082 | trehalose | + | carbon source |
32019 | 53423 | tween 40 | + | carbon source |
32019 | 53425 | tween 60 | + | carbon source |
32019 | 53426 | tween 80 | + | carbon source |
32019 | 18222 | xylose | + | carbon source |
32019 | 4853 | esculin | + | hydrolysis |
enzymes
@ref | value | activity | ec |
---|---|---|---|
32019 | catalase | + | 1.11.1.6 |
32019 | gelatinase | + |
Isolation, sampling and environmental information
isolation
- @ref: 7460
- sample type: surface sea water
- geographic location: Gori-gun, Busan
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Surface water |
taxonmaps
- @ref: 69479
- File name: preview.99_10385.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_2557;97_3126;98_3926;99_10385&stattab=map
- Last taxonomy: Terribacillus
- 16S sequence: DQ519571
- Sequence Identity:
- Total samples: 10598
- soil counts: 5792
- aquatic counts: 1104
- animal counts: 1158
- plant counts: 2544
Safety information
risk assessment
- @ref: 7460
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7460
- description: Terribacillus goriensis strain CL-GR16 16S ribosomal RNA gene, partial sequence
- accession: DQ519571
- length: 1433
- database: ena
- NCBI tax ID: 386490
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Terribacillus goriensis DSM 18252 | GCA_002884435 | scaffold | ncbi | 386490 |
66792 | Terribacillus goriensis strain DSM 18252 | 386490.3 | wgs | patric | 386490 |
GC content
- @ref: 7460
- GC-content: 43
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | yes | 55.289 | no |
gram-positive | yes | 92.25 | no |
anaerobic | no | 98.15 | no |
aerobic | yes | 89.065 | no |
halophile | yes | 65.382 | yes |
spore-forming | yes | 94.203 | yes |
glucose-util | yes | 90.323 | yes |
thermophile | no | 99.547 | yes |
motile | yes | 84.235 | no |
glucose-ferment | no | 79.629 | no |
External links
@ref: 7460
culture collection no.: DSM 18252, KCCM 42329
straininfo link
- @ref: 71163
- straininfo: 309484
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 17625193 | Pelagibacillus goriensis gen. nov., sp. nov., a moderately halotolerant bacterium isolated from coastal water off the east coast of Korea. | Kim YG, Hwang CY, Yoo KW, Moon HT, Yoon JH, Cho BC | Int J Syst Evol Microbiol | 10.1099/ijs.0.64820-0 | 2007 | Aerobiosis, Anti-Bacterial Agents/pharmacology, Bacillus/chemistry/*classification/genetics/*isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella, Genes, rRNA, Hydrogen-Ion Concentration, Korea, Locomotion, Molecular Sequence Data, Oxidoreductases/analysis, Phospholipids/analysis, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Saline Solution, Hypertonic/pharmacology, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Temperature, Vitamin K 2/analysis | Enzymology |
Phylogeny | 18842842 | Proposal for transfer of Pelagibacillus goriensis Kim et al. 2007 to the genus Terribacillus as Terribacillus goriensis comb. nov. | Krishnamurthi S, Chakrabarti T | Int J Syst Evol Microbiol | 10.1099/ijs.0.65579-0 | 2008 | Bacillaceae/chemistry/*classification/*genetics, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Genes, rRNA, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology | Phenotype |
Phylogeny | 20118295 | Terribacillus aidingensis sp. nov., a moderately halophilic bacterium. | Liu W, Jiang L, Guo C, Yang SS | Int J Syst Evol Microbiol | 10.1099/ijs.0.017228-0 | 2010 | Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
7460 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18252) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18252 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
32019 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28271 | 28776041 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
71163 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID309484.1 | StrainInfo: A central database for resolving microbial strain identifiers |