Strain identifier

BacDive ID: 1517

Type strain: Yes

Species: Terribacillus goriensis

Strain Designation: CL-GR16

Strain history: <- Byung C. Cho, CL-GR16

NCBI tax ID(s): 386490 (species)

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General

@ref: 7460

BacDive-ID: 1517

DSM-Number: 18252

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Terribacillus goriensis CL-GR16 is an aerobe, spore-forming, mesophilic bacterium that was isolated from surface sea water.

NCBI tax id

  • NCBI tax id: 386490
  • Matching level: species

strain history

  • @ref: 7460
  • history: <- Byung C. Cho, CL-GR16

doi: 10.13145/bacdive1517.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Terribacillus
  • species: Terribacillus goriensis
  • full scientific name: Terribacillus goriensis (Kim et al. 2007) Krishnamurthi and Chakrabarti 2009

  • synonyms

    • @ref: 20215
    • synonym: Pelagibacillus goriensis

@ref: 7460

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Terribacillus

species: Terribacillus goriensis

full scientific name: Terribacillus goriensis (Kim et al. 2007) Krishnamurthi and Chakrabarti 2009

strain designation: CL-GR16

type strain: yes

Morphology

cell morphology

  • @ref: 32019
  • gram stain: positive
  • cell length: 1.75 µm
  • cell width: 0.55 µm
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

  • @ref: 7460
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7460positivegrowth30mesophilic
32019positivegrowth15-43
32019positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
32019positivegrowth5.5-9.0alkaliphile
32019positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 32019
  • oxygen tolerance: aerobe

spore formation

  • @ref: 32019
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
32019NaClpositivegrowth0.0-14 %
32019NaClpositiveoptimum1 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3201917057cellobiose+carbon source
3201916947citrate+carbon source
3201928757fructose+carbon source
3201928260galactose+carbon source
3201917234glucose+carbon source
3201917716lactose+carbon source
3201929864mannitol+carbon source
3201937684mannose+carbon source
3201928053melibiose+carbon source
32019506227N-acetylglucosamine+carbon source
3201915361pyruvate+carbon source
3201926546rhamnose+carbon source
3201917814salicin+carbon source
3201917992sucrose+carbon source
3201927082trehalose+carbon source
3201953423tween 40+carbon source
3201953425tween 60+carbon source
3201953426tween 80+carbon source
3201918222xylose+carbon source
320194853esculin+hydrolysis

enzymes

@refvalueactivityec
32019catalase+1.11.1.6
32019gelatinase+

Isolation, sampling and environmental information

isolation

  • @ref: 7460
  • sample type: surface sea water
  • geographic location: Gori-gun, Busan
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Surface water

taxonmaps

  • @ref: 69479
  • File name: preview.99_10385.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_2557;97_3126;98_3926;99_10385&stattab=map
  • Last taxonomy: Terribacillus
  • 16S sequence: DQ519571
  • Sequence Identity:
  • Total samples: 10598
  • soil counts: 5792
  • aquatic counts: 1104
  • animal counts: 1158
  • plant counts: 2544

Safety information

risk assessment

  • @ref: 7460
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7460
  • description: Terribacillus goriensis strain CL-GR16 16S ribosomal RNA gene, partial sequence
  • accession: DQ519571
  • length: 1433
  • database: ena
  • NCBI tax ID: 386490

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Terribacillus goriensis DSM 18252GCA_002884435scaffoldncbi386490
66792Terribacillus goriensis strain DSM 18252386490.3wgspatric386490

GC content

  • @ref: 7460
  • GC-content: 43

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes55.289no
gram-positiveyes92.25no
anaerobicno98.15no
aerobicyes89.065no
halophileyes65.382yes
spore-formingyes94.203yes
glucose-utilyes90.323yes
thermophileno99.547yes
motileyes84.235no
glucose-fermentno79.629no

External links

@ref: 7460

culture collection no.: DSM 18252, KCCM 42329

straininfo link

  • @ref: 71163
  • straininfo: 309484

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17625193Pelagibacillus goriensis gen. nov., sp. nov., a moderately halotolerant bacterium isolated from coastal water off the east coast of Korea.Kim YG, Hwang CY, Yoo KW, Moon HT, Yoon JH, Cho BCInt J Syst Evol Microbiol10.1099/ijs.0.64820-02007Aerobiosis, Anti-Bacterial Agents/pharmacology, Bacillus/chemistry/*classification/genetics/*isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella, Genes, rRNA, Hydrogen-Ion Concentration, Korea, Locomotion, Molecular Sequence Data, Oxidoreductases/analysis, Phospholipids/analysis, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Saline Solution, Hypertonic/pharmacology, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Temperature, Vitamin K 2/analysisEnzymology
Phylogeny18842842Proposal for transfer of Pelagibacillus goriensis Kim et al. 2007 to the genus Terribacillus as Terribacillus goriensis comb. nov.Krishnamurthi S, Chakrabarti TInt J Syst Evol Microbiol10.1099/ijs.0.65579-02008Bacillaceae/chemistry/*classification/*genetics, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Genes, rRNA, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil MicrobiologyPhenotype
Phylogeny20118295Terribacillus aidingensis sp. nov., a moderately halophilic bacterium.Liu W, Jiang L, Guo C, Yang SSInt J Syst Evol Microbiol10.1099/ijs.0.017228-02010Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
7460Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18252)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18252
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32019Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2827128776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71163Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID309484.1StrainInfo: A central database for resolving microbial strain identifiers