Strain identifier
BacDive ID: 151408
Type strain: 
Species: Streptococcus agalactiae
NCBI tax ID(s): 1105261 (strain), 1311 (species)
version 9.3 (current version)
General
@ref: 56110
BacDive-ID: 151408
keywords: genome sequence, Bacteria, anaerobe, mesophilic
description: Streptococcus agalactiae CCUG 44050 is an anaerobe, mesophilic bacterium that was isolated from Human vagina,fornix,healthy subject.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1105261 | strain |
| 1311 | species |
doi: 10.13145/bacdive151408.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus agalactiae
- full scientific name: Streptococcus agalactiae Lehmann and Neumann 1896 (Approved Lists 1980)
synonyms
@ref synonym 20215 Streptococcus difficile 20215 Streptococcus difficilis
@ref: 56110
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus agalactiae
type strain: no
Culture and growth conditions
culture temp
- @ref: 56110
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 56110 | anaerobe | |
| 125439 | obligate aerobe | 96.8 |
spore formation
- @ref: 125439
- spore formation: no
- confidence: 90.9
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68381 | 29016 | arginine | + | hydrolysis |
| 68381 | 16988 | D-ribose | + | builds acid from |
| 68381 | 16899 | D-mannitol | - | builds acid from |
| 68381 | 30911 | sorbitol | - | builds acid from |
| 68381 | 17716 | lactose | - | builds acid from |
| 68381 | 27082 | trehalose | + | builds acid from |
| 68381 | 16634 | raffinose | - | builds acid from |
| 68381 | 17992 | sucrose | + | builds acid from |
| 68381 | 30849 | L-arabinose | - | builds acid from |
| 68381 | 18333 | D-arabitol | - | builds acid from |
| 68381 | 40585 | alpha-cyclodextrin | - | builds acid from |
| 68381 | 606565 | hippurate | + | hydrolysis |
| 68381 | 28087 | glycogen | + | builds acid from |
| 68381 | 27941 | pullulan | + | builds acid from |
| 68381 | 17306 | maltose | + | builds acid from |
| 68381 | 28053 | melibiose | - | builds acid from |
| 68381 | 6731 | melezitose | - | builds acid from |
| 68381 | 320055 | methyl beta-D-glucopyranoside | + | builds acid from |
| 68381 | 16443 | D-tagatose | - | builds acid from |
| 68381 | 16199 | urea | - | hydrolysis |
metabolite production
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- production: yes
metabolite tests
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68381 | urease | - | 3.5.1.5 |
| 68381 | beta-mannosidase | - | 3.2.1.25 |
| 68381 | glycyl tryptophan arylamidase | - | |
| 68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
| 68381 | beta-galactosidase | - | 3.2.1.23 |
| 68381 | beta-glucuronidase | + | 3.2.1.31 |
| 68381 | beta-glucosidase | - | 3.2.1.21 |
| 68381 | arginine dihydrolase | + | 3.5.3.6 |
| 68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | |
| 68381 | alkaline phosphatase | + | 3.1.3.1 |
| 68381 | alpha-galactosidase | - | 3.2.1.22 |
API rID32STR
| @ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56110 | + | - | - | + | - | + | + | - | - | - | + | - | + | - | - | - | + | + | - | - | - | - | + | + | + | + | - | - | + | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 56110
- sample type: Human vagina,fornix,healthy subject
- sampling date: 1999-05-19
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Urogenital tract | #Vagina |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptococcus agalactiae CCUG 44050 | GCA_000311205 | contig | ncbi | 1105261 |
| 66792 | Streptococcus agalactiae CCUG 44050 | 1105261.3 | wgs | patric | 1105261 |
| 66792 | Streptococcus agalactiae CCUG 44050 | 2671180277 | draft | img | 1105261 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 86.14 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 91.257 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 85.028 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 96.008 | yes |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.942 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 88.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 90.9 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 71.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 84.6 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 96.8 |
External links
@ref: 56110
culture collection no.: CCUG 44050
straininfo link
- @ref: 105538
- straininfo: 109802
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 56110 | Curators of the CCUG | https://www.ccug.se/strain?id=44050 | Culture Collection University of Gothenburg (CCUG) (CCUG 44050) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68381 | Automatically annotated from API rID32STR | |||
| 105538 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID109802.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |