Strain identifier

BacDive ID: 151217

Type strain: No

Species: Sphingomonas sp.

NCBI tax ID(s): 28214 (species)

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General

@ref: 55890

BacDive-ID: 151217

keywords: Bacteria

description: Sphingomonas sp. CCUG 43484 is a bacterium that was isolated from Water.

NCBI tax id

  • NCBI tax id: 28214
  • Matching level: species

doi: 10.13145/bacdive151217.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Sphingomonadaceae
  • genus: Sphingomonas
  • species: Sphingomonas sp.
  • full scientific name: Sphingomonas Yabuuchi et al. 1990

@ref: 55890

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas sp.

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    55890C14:00.414
    55890C16:07.716
    55890C18:00.518
    55890C14:0 2OH8.615.205
    55890C15:0 ISO 3OH0.616.135
    55890C16:1 ω5c1.515.908
    55890C16:1 ω7c3.915.819
    55890C17:1 ω6c2.516.862
    55890C17:1 ω8c0.516.792
    55890C18:1 ω5c1.317.919
    55890C18:1 ω7c /12t/9t61.517.824
    55890C19:0 CYCLO ω8c0.518.9
    55890Unidentified1.716.294
    55890Unidentified918.146
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20NE

@refTRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
55890----+-++++-++---+-+-

Isolation, sampling and environmental information

isolation

  • @ref: 55890
  • sample type: Water
  • sampling date: 2000-03-01
  • geographic location: Huddinge
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

External links

@ref: 55890

culture collection no.: CCUG 43484

straininfo link

  • @ref: 105377
  • straininfo: 109626

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
55890Curators of the CCUGhttps://www.ccug.se/strain?id=43484Culture Collection University of Gothenburg (CCUG) (CCUG 43484)
68369Automatically annotated from API 20NE
105377Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID109626.1