Strain identifier

BacDive ID: 15119

Type strain: No

Species: Streptomyces hirsutus

Strain history: KCC S-0363 <-- IFO 12857 <-- SAJ <-- ISP 5198 <-- INMI 414.

NCBI tax ID(s): 35620 (species)

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General

@ref: 9259

BacDive-ID: 15119

DSM-Number: 40198

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces hirsutus DSM 40198 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 35620
  • Matching level: species

strain history

@refhistory
9259<- E.B. Shirling, ISP <- N.A. Krassilnikov, INMI
67770KCC S-0363 <-- IFO 12857 <-- SAJ <-- ISP 5198 <-- INMI 414.

doi: 10.13145/bacdive15119.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces hirsutus
  • full scientific name: Streptomyces hirsutus Ettlinger et al. 1958 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Actinomyces cyanoalbus
    20215Streptomyces cyanoalbus

@ref: 9259

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces hirsutus

full scientific name: Streptomyces hirsutus Ettlinger et al. 1958 emend. Labeda et al. 2016

type strain: no

Culture and growth conditions

culture medium

  • @ref: 9259
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18557positiveoptimum28mesophilic
9259positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1855717234glucose+
1855722599arabinose+
1855717992sucrose+
1855718222xylose+
1855717268myo-inositol+
1855729864mannitol+/-
1855728757fructose+/-
1855726546rhamnose+
1855716634raffinose+
1855762968cellulose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18557++++++++-++-+-+++--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18557+++++----++

Isolation, sampling and environmental information

isolation

@refsample type
9259soil
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_3792.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_1938;98_2384;99_3792&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AY999789
  • Sequence Identity:
  • Total samples: 449
  • soil counts: 341
  • aquatic counts: 41
  • animal counts: 50
  • plant counts: 17

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
185571German classification
92591Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces cyanoalbus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4363D44080120ena66884
20218Streptomyces cyanoalbus gene for 16S rRNA, partial sequence, strain: NBRC 12857AB1848821467ena66884
20218Streptomyces cyanoalbus strain NRRL B-3040 16S ribosomal RNA gene, partial sequenceAY9997891496ena66884

Genome sequences

  • @ref: 67770
  • description: Streptomyces hirsutus NRRL B-3040
  • accession: GCA_001418175
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 35620

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.715no
gram-positiveyes91.799no
anaerobicno98.645no
aerobicyes90.328no
halophileno92.095no
spore-formingyes94.237no
glucose-utilyes89.544no
thermophileno97.676yes
motileno93.943no
glucose-fermentno86.137no

External links

@ref: 9259

culture collection no.: DSM 40198, ATCC 15859, ATCC 23902, CBS 798.68, IFO 12857, INMI 414, ISP 5198, NBRC 12857, NRRL B-3040, RIA 1150, RIA 662, JCM 4363, BCRC 13788, CGMCC 4.1426, HAMBI 1045, LMG 19343, NCIMB 9831, VKM Ac-585

straininfo link

  • @ref: 84224
  • straininfo: 13352

literature

  • topic: Phylogeny
  • Pubmed-ID: 17625208
  • title: Streptomyces emeiensis sp. nov., a novel streptomycete from soil in China.
  • authors: Sun W, Huang Y, Zhang YQ, Liu ZH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.64934-0
  • year: 2007
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Streptomyces/chemistry/*classification/genetics/*isolation & purification
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9259Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40198)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40198
18557Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40198.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84224Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13352.1StrainInfo: A central database for resolving microbial strain identifiers