Strain identifier
BacDive ID: 15118
Type strain: 
Species: Streptomyces cyaneus
Strain Designation: H-112
Strain history: KCC S-0220 <-- NRRL B-2296 <-- IMRU 3761 <-- H. J. Kutzner H-112 <-- Todorovic.
NCBI tax ID(s): 1904 (species)
version 9.3 (current version)
General
@ref: 9319
BacDive-ID: 15118
DSM-Number: 40108
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic
description: Streptomyces cyaneus H-112 is an aerobe, spore-forming, mesophilic bacterium of the family Streptomycetaceae.
NCBI tax id
- NCBI tax id: 1904
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9319 | <- L. Ettlinger, LBG <- R. Hütter, ETH <- IMRU <- H.J. Kutzner, H-112 <- Todorovic |
| 67770 | KCC S-0220 <-- NRRL B-2296 <-- IMRU 3761 <-- H. J. Kutzner H-112 <-- Todorovic. |
doi: 10.13145/bacdive15118.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces cyaneus
- full scientific name: Streptomyces cyaneus (Krassilnikov 1941) Waksman 1953 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Actinomyces cyaneus
@ref: 9319
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces cyaneus
full scientific name: Streptomyces cyaneus (Krassilnikov 1941) Waksman 1953
strain designation: H-112
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | positive | 99.9 | |
| 125439 | 93.7 | no |
Culture and growth conditions
culture medium
- @ref: 9319
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 9319 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 125438 | aerobe | 90.703 |
| 125439 | obligate aerobe | 98.3 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | yes | 90.86 |
| 125439 | yes | 92.4 |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_2548.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_118;99_2548&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AB184872
- Sequence Identity:
- Total samples: 1138
- soil counts: 755
- aquatic counts: 44
- animal counts: 39
- plant counts: 300
Safety information
risk assessment
- @ref: 9319
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces cyaneus partial 16S rRNA gene, type strain DSM 40108 | AJ310927 | 1444 | nuccore | 1904 |
| 20218 | Streptomyces cyaneus partial 16S rRNA gene, strain ISP 5108 | AJ399460 | 1448 | nuccore | 1904 |
| 20218 | Streptomyces cyaneus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4743 | D44327 | 120 | nuccore | 1904 |
| 20218 | Streptomyces cyaneus gene for 16S rRNA, partial sequence, strain: NBRC 13346 | AB184872 | 1458 | nuccore | 1904 |
| 20218 | Streptomyces cyaneus strain NRRL B-2296 16S ribosomal RNA gene, complete sequence | AF346475 | 1507 | nuccore | 1904 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces cyaneus strain CGMCC 4.1671 | 1904.6 | wgs | patric | 1904 |
| 66792 | Streptomyces cyaneus CGMCC 4.1671 | 2867394672 | draft | img | 1904 |
| 67770 | Streptomyces cyaneus CGMCC 4.1671 | GCA_004028635 | scaffold | ncbi | 1904 |
GC content
- @ref: 67770
- GC-content: 72.2
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 89.961 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.891 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 90.86 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 90.703 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.491 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 88 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 92.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 93.7 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 99.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 98.3 |
External links
@ref: 9319
culture collection no.: DSM 40108, ATCC 14923, CBS 647.72, ETH 31577, IFO 13346, IMRU 3761, ISP 5108, LBG A 3119, NBRC 13346, RIA 1307, JCM 4220, BCRC 13767, CGMCC 4.1671, CGMCC 4.2113, JCM 4743, KCTC 9719, NRRL B-16305, NRRL B-2296, PCM 2297, VKM Ac-1712
straininfo link
- @ref: 84223
- straininfo: 265456
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 14042949 | STREPTOMYCES SPECIES COMPRISING THE BLUE-SPORE SERIES. | TREJO WH, BENNETT RE | J Bacteriol | 10.1128/jb.85.3.676-690.1963 | 1963 | *Classification, *Color, *Physiology, *Spores, Bacterial, *Sprains and Strains, *Streptomyces | |
| Phylogeny | 31613202 | Streptomyces cavernae sp. nov., a novel actinobacterium isolated from a karst cave sediment sample. | Fang BZ, Han MX, Jiao JY, Xie YG, Zhang XT, Liu L, Zhang ZT, Xiao M, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003724 | 2020 | Bacterial Typing Techniques, Base Composition, Caves/*microbiology, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 34460021 | Streptomyces luteolifulvus sp. nov., a novel actinomycete isolated from soil in Nanjing, China. | Zhao S, Cheng M, Lin C, Liu H, Wang Z, Zhang K, Song S, Yang Q | Antonie Van Leeuwenhoek | 10.1007/s10482-021-01643-2 | 2021 | *Actinobacteria/genetics, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil, *Streptomyces/genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9319 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40108) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40108 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 84223 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID265456.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |