Strain identifier

BacDive ID: 15092

Type strain: Yes

Species: Streptomyces cinereoruber

Strain Designation: PSAM 192

Strain history: KCC S-0205 <-- J. Nüesch.

NCBI tax ID(s): 67260 (species)

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General

@ref: 9213

BacDive-ID: 15092

DSM-Number: 40012

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces cinereoruber PSAM 192 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 67260
  • Matching level: species

strain history

@refhistory
9213<- E.B. Shirling, ISP <- R. Hütter, ETH, 7451
67770KCC S-0205 <-- J. Nüesch.

doi: 10.13145/bacdive15092.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces cinereoruber
  • full scientific name: Streptomyces cinereoruber Corbaz et al. 1957 (Approved Lists 1980)

@ref: 9213

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces cinereoruber subsp. cinereoruber

full scientific name: Streptomyces cinereoruber subsp. cinereoruber Corbaz et al. 1957

strain designation: PSAM 192

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.091
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9213GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9213ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18463positiveoptimum28mesophilic
9213positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes99.737

compound production

  • @ref: 9213
  • compound: rhodomycin A + B

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1846317234glucose+
1846322599arabinose+
1846317992sucrose-
1846318222xylose-
1846317268myo-inositol+
1846329864mannitol-
1846328757fructose-
1846326546rhamnose-
1846316634raffinose-
1846362968cellulose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refmetaboliteproductionChebi-ID
67770rhodomycin Ayes
67770rhodomycin Byes
68368acetoinyes15688
68368indoleno35581
68368hydrogen sulfideno16136

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18463+++++++++++-+-+++--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18463+++++-+--++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
9213soil
67770SoilLes Antiques, Alpilles, ProvenceFranceFRAEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_2484.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_766;99_2484&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AY999771
  • Sequence Identity:
  • Total samples: 971
  • soil counts: 718
  • aquatic counts: 54
  • animal counts: 76
  • plant counts: 123

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
184631German classification
92131Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces cinereoruber subsp. cinereoruber gene for 16S rRNA, partial sequenceAB122744564ena67262
20218Streptomyces cinereoruber subsp. cinereoruber strain JCM 4205 16S ribosomal RNA gene, partial sequenceAY9997711425ena67262
20218Streptomyces cinereoruber subsp. cinereoruber gene for 16S ribosomal RNA, partial sequence, strain: JCM 4572D44240120ena67262
20218Streptomyces cinereoruber subsp. cinereoruber gene for 16S rRNA, partial sequence, strain: NBRC 12756AB1841211466ena67262

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces cinereoruber ATCC 19740GCA_009299385completencbi67260
66792Streptomyces cinereoruber strain ATCC 1974067260.4completepatric67260
66792Streptomyces cinereoruber strain DSM 4151267260.5wgspatric67260
66792Streptomyces cinereoruber subsp. cinereoruber strain JCM 420567262.3wgspatric67262
66792Streptomyces cinereoruber subsp. cinereoruber strain JCM420567262.4wgspatric67262
66792Streptomyces cinereoruber DSM 415122820999004draftimg67260
67770Streptomyces cinereoruber DSM 41512GCA_011758705contigncbi67260
66792Streptomyces cinereoruber JCM 4205GCA_014649095scaffoldncbi67260
66792Streptomyces cinereoruber JCM4205GCA_019880525contigncbi67260

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.191no
gram-positiveyes90.613no
anaerobicno99.104no
aerobicyes92.477no
halophileno95.555no
spore-formingyes95.603no
thermophileno99.212no
glucose-utilyes89.126yes
motileno94.79no
glucose-fermentno86.895no

External links

@ref: 9213

culture collection no.: DSM 40012, ATCC 19740, CBS 479.68, DSM 41512, IFO 12756, ISP 5012, JCM 4205, JCM 4572, KCC S-0205, KCC S-0572, NBRC 12756, RIA 1021, ETH 7451, BCRC 11816, CGMCC 4.1698, KCTC 9706, NCIMB 9797, NRRL 2589, RIA 535, VKM Ac-1860

straininfo link

  • @ref: 84198
  • straininfo: 37091

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24091604Streptomyces fukangensis sp. nov., a novel alkaliphilic actinomycete isolated from a saline-alkaline soil.Zhang YG, Wang HF, Liu Q, Hozzein WN, Wadaan MA, Cheng J, Chen YJ, Zhang YM, Li WJAntonie Van Leeuwenhoek10.1007/s10482-013-0045-82013Amino Acids/analysis, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desert Climate, Fatty Acids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/physiologyGenetics
Phylogeny31823203Screening of Gastrointestinal Lipase Inhibitors Produced by Microorganisms Isolated from Soil and Lake Sediments.Camacho-Ruiz MA, Ordaz E, Kirchmayr MR, Esquivel-Solis H, Asaff-Torres A, Mateos-Diaz JC, Carrire F, Rodriguez JAInt Microbiol10.1007/s10123-019-00107-y2019Actinobacteria/genetics/isolation & purification/metabolism, Animals, Biological Products, Enzyme Inhibitors/chemistry/metabolism, Geologic Sediments/*microbiology, Humans, Lakes/microbiology, Lipase/antagonists & inhibitors/metabolism, RNA, Ribosomal, 16S, Soil Microbiology, Streptomyces/genetics/*isolation & purification/metabolismMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9213Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40012)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40012
18463Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40012.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84198Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID37091.1StrainInfo: A central database for resolving microbial strain identifiers