Strain identifier
BacDive ID: 15080
Type strain:
Species: Streptomyces chartreusis
Strain history: <- NRRL
NCBI tax ID(s): 1079985 (strain), 1969 (species)
version 8.1 (current version)
General
@ref: 10312
BacDive-ID: 15080
DSM-Number: 41447
keywords: genome sequence, Bacteria, spore-forming, mesophilic
description: Streptomyces chartreusis DSM 41447 is a spore-forming, mesophilic bacterium that builds an aerial mycelium.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1079985 | strain |
1969 | species |
strain history
- @ref: 10312
- history: <- NRRL
doi: 10.13145/bacdive15080.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces chartreusis
- full scientific name: Streptomyces chartreusis Leach et al. 1953 (Approved Lists 1980)
@ref: 10312
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces chartreusis
full scientific name: Streptomyces chartreusis Leach et al. 1953
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 95.795 | |
69480 | 100 | positive |
colony morphology
@ref | colony color | medium used |
---|---|---|
69277 | Sand yellow (1002) | ISP 2 |
69277 | Sand yellow (1002) | ISP 3 |
69277 | Sand yellow (1002) | ISP 4 |
69277 | Sand yellow (1002) | ISP 6 |
69277 | Sand yellow (1002) | suter with tyrosine |
69277 | Sand yellow (1002) | suter without tyrosine |
69277 | Sand yellow (1002), Beige (1001) | ISP 7 |
69277 | Sand yellow (1002), Light ivory (1015) | ISP 5 |
multicellular morphology
@ref | forms multicellular complex | complex name | medium name | complex color |
---|---|---|---|---|
69277 | no | Aerial mycelium | ISP 2 | |
69277 | yes | Aerial mycelium | ISP 3 | Signal white (9003), squirrel grey (7000) |
69277 | yes | Aerial mycelium | ISP 4 | Grey white (9002) |
69277 | no | Aerial mycelium | ISP 5 | |
69277 | no | Aerial mycelium | ISP 6 | |
69277 | yes | Aerial mycelium | ISP 7 | Light ivory (1015), agate grey (7038) |
69277 | yes | Aerial mycelium | suter with tyrosine | Light ivory (1015) |
69277 | yes | Aerial mycelium | suter without tyrosine | Light ivory (1015) |
pigmentation
@ref | production | name | color |
---|---|---|---|
69277 | no | Melanin | |
69277 | yes | soluble pigment | Ochre yellow (1024) |
multimedia
@ref | multimedia content | caption | intellectual property rights |
---|---|---|---|
10312 | https://www.dsmz.de/microorganisms/photos/DSM_41447.jpg | Medium 84 28°C | © Leibniz-Institut DSMZ |
69277 | DSM_41447_image6.jpeg | (ISP6, ISP7) | Helmholtz-Zentrum für Infektionsforschung GmbH |
69277 | DSM_41447_image7.jpeg | (SSM+T, SSM-T) | Helmholtz-Zentrum für Infektionsforschung GmbH |
Culture and growth conditions
culture medium
- @ref: 10312
- name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)
- growth: yes
- link: https://mediadive.dsmz.de/medium/84
- composition: Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
culture temp
- @ref: 10312
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
halophily
- @ref: 69277
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-10 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
69277 | 22599 | arabinose | + | growth |
69277 | 62968 | cellulose | - | growth |
69277 | 28757 | fructose | + | growth |
69277 | 17234 | glucose | + | growth |
69277 | 17268 | inositol | + | growth |
69277 | 37684 | mannose | + | growth |
69277 | 16634 | raffinose | + | growth |
69277 | 26546 | rhamnose | + | growth |
69277 | 17992 | sucrose | + | growth |
69277 | 18222 | xylose | + | growth |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | + | hydrolysis |
68379 | 5291 | gelatin | + | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | gelatinase | + | |
68379 | urease | + | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | + | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase lipase (C 8) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69277 | - | - | - | + | - | + | + | - | - | + | + | - | - | - | - | - | - | - | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69277 | + | +/- | - | +/- | + | + | +/- | + | + | + | + | - | +/- | - | + | +/- | + | - | - |
Safety information
risk assessment
- @ref: 10312
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces chartreusis NRRL 3882 NRRL3882 | GCA_900236475 | complete | ncbi | 1079985 |
66792 | Streptomyces chartreusis NRRL 3882 NRRL3882 | GCA_900236505 | complete | ncbi | 1079985 |
66792 | Streptomyces chartreusis NRRL 3882 | GCA_000226435 | scaffold | ncbi | 1079985 |
66792 | Streptomyces chartreusis NRRL 3882 | 1079985.4 | wgs | patric | 1079985 |
66792 | Streptomyces chartreusis NRRL 3882 strain NRRL3882 | 1079985.10 | complete | patric | 1079985 |
66792 | Streptomyces chartreusis NRRL 3882 strain NRRL3882 | 1079985.11 | complete | patric | 1079985 |
66792 | Streptomyces chartreusis NRRL 3882 | 2582581677 | draft | img | 1079985 |
66792 | Streptomyces chartreusis NRRL 3882 | 2547132121 | draft | img | 1079985 |
66792 | Streptomyces chartreusis NRRL 3882 | 2582581678 | draft | img | 1079985 |
66792 | Streptomyces chartreusis NRRL 3882 | 2582581679 | draft | img | 1079985 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
flagellated | no | 97.837 | no |
gram-positive | yes | 86.83 | no |
anaerobic | no | 98.806 | no |
aerobic | yes | 93.634 | no |
halophile | no | 90.337 | no |
spore-forming | yes | 94.668 | no |
thermophile | no | 97.032 | yes |
glucose-util | yes | 89.516 | yes |
motile | no | 93.885 | no |
glucose-ferment | no | 89.871 | yes |
External links
@ref: 10312
culture collection no.: DSM 41447, NRRL 3882
straininfo link
- @ref: 84186
- straininfo: 50000
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 21173184 | Characterization of the biosynthesis gene cluster for the pyrrole polyether antibiotic calcimycin (A23187) in Streptomyces chartreusis NRRL 3882. | Wu Q, Liang J, Lin S, Zhou X, Bai L, Deng Z, Wang Z | Antimicrob Agents Chemother | 10.1128/AAC.01130-10 | 2010 | Amino Acid Sequence, Anti-Bacterial Agents/*biosynthesis, Bacterial Proteins/chemistry/genetics/metabolism, Calcimycin/*biosynthesis/chemistry, Molecular Sequence Data, Molecular Structure, Sequence Homology, Amino Acid, Streptomyces/genetics/*metabolism | Genetics |
Genetics | 22123769 | Genome sequences of three tunicamycin-producing Streptomyces Strains, S. chartreusis NRRL 12338, S. chartreusis NRRL 3882, and S. lysosuperificus ATCC 31396. | Doroghazi JR, Ju KS, Brown DW, Labeda DP, Deng Z, Metcalf WW, Chen W, Price NP | J Bacteriol | 10.1128/JB.06262-11 | 2011 | Anti-Bacterial Agents/*metabolism, Base Sequence, Cephalosporins/metabolism, *Genome, Bacterial, Molecular Sequence Data, Streptomyces/*genetics/metabolism, Tunicamycin/*biosynthesis | Metabolism |
Metabolism | 23583975 | Characterization of the N-methyltransferase CalM involved in calcimycin biosynthesis by Streptomyces chartreusis NRRL 3882. | Wu Q, Gou L, Lin S, Liang J, Yin J, Zhou X, Bai L, An D, Deng Z, Wang Z | Biochimie | 10.1016/j.biochi.2013.03.014 | 2013 | Amino Acid Sequence, Bacterial Proteins/*chemistry/genetics/metabolism, Base Sequence, Calcimycin/*biosynthesis, Kinetics, Methyltransferases/*chemistry/genetics/metabolism, Molecular Sequence Data, Multigene Family, Streptomyces/*enzymology/metabolism | Enzymology |
29238338 | A Novel TetR Family Transcriptional Regulator, CalR3, Negatively Controls Calcimycin Biosynthesis in Streptomyces chartreusis NRRL 3882. | Gou L, Han T, Wang X, Ge J, Liu W, Hu F, Wang Z | Front Microbiol | 10.3389/fmicb.2017.02371 | 2017 | |||
Metabolism | 29463727 | The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry. | Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE | Proc Natl Acad Sci U S A | 10.1073/pnas.1715713115 | 2018 | Anti-Bacterial Agents/chemistry/metabolism, Deferoxamine/chemistry/metabolism, Metabolic Networks and Pathways, Metabolome/*physiology, Metabolomics, Models, Molecular, *Siderophores/chemistry/metabolism, Streptomyces/*chemistry/*metabolism | |
Metabolism | 29654174 | Cezomycin Is Activated by CalC to Its Ester Form for Further Biosynthesis Steps in the Production of Calcimycin in Streptomyces chartreusis NRRL 3882. | Wu H, Liang J, Wang J, Liang WJ, Gou L, Wu Q, Zhou X, Bruce IJ, Deng Z, Wang Z | Appl Environ Microbiol | 10.1128/AEM.00586-18 | 2018 | Bacterial Proteins/genetics/*metabolism, Biosynthetic Pathways, Calcimycin/*analogs & derivatives/*biosynthesis/metabolism, Esters/*metabolism, Mutation, Pyrophosphatases/genetics/metabolism, Streptomyces/*enzymology/genetics | Biotechnology |
Metabolism | 29654175 | Recycling of Overactivated Acyls by a Type II Thioesterase during Calcimycin Biosynthesis in Streptomyces chartreusis NRRL 3882. | Wu H, Liang J, Gou L, Wu Q, Liang WJ, Zhou X, Bruce IJ, Deng Z, Wang Z | Appl Environ Microbiol | 10.1128/AEM.00587-18 | 2018 | Acyl Coenzyme A/metabolism, Anti-Bacterial Agents/biosynthesis, Bacterial Proteins/genetics/*metabolism, Biosynthetic Pathways, Calcimycin/analogs & derivatives/*biosynthesis, Fatty Acid Synthases/genetics/*metabolism, Multigene Family, Streptomyces/*enzymology/genetics, Thiolester Hydrolases/genetics/*metabolism | Enzymology |
Phylogeny | 30928538 | Discovery of three novel sesquiterpene synthases from Streptomyces chartreusis NRRL 3882 and crystal structure of an alpha-eudesmol synthase. | Kracht ON, Correia Cordeiro RS, Hakansson M, Stockmann J, Sander D, Bandow J, Senges CHR, Logan DT, Kourist R | J Biotechnol | 10.1016/j.jbiotec.2019.03.006 | 2019 | Alkyl and Aryl Transferases/*chemistry, Crystallography, X-Ray, Dynamic Light Scattering, Genetic Association Studies, Models, Molecular, Phylogeny, Sesquiterpenes, Eudesmane/chemistry/*metabolism, Streptomyces/*enzymology/genetics | Metabolism |
Metabolism | 31317529 | Synthesis of cinnabarinic acid by metabolically engineered Pseudomonas chlororaphis GP72. | Yue SJ, Song C, Li S, Huang P, Guo SQ, Hu HB, Wang W, Zhang XH | Biotechnol Bioeng | 10.1002/bit.27118 | 2019 | *Bacterial Proteins/biosynthesis/genetics, *Biosynthetic Pathways, *Gene Expression Regulation, Bacterial, *Metabolic Engineering, Oxazines/*metabolism, *Pseudomonas chlororaphis/genetics/metabolism | |
Proteome | 34444489 | Influence of Amino Acid Feeding on Production of Calcimycin and Analogs in Streptomyces chartreusis. | Arend KI, Bandow JE | Int J Environ Res Public Health | 10.3390/ijerph18168740 | 2021 | *Amino Acids, Calcimycin, Chromatography, Liquid, Streptomyces, *Tandem Mass Spectrometry | Biotechnology |
Metabolism | 35808848 | Characterization of three novel DyP-type peroxidases from Streptomyces chartreusis NRRL 3882. | Yayci A, Bachmann N, Dirks T, Hofmann E, Bandow JE | J Appl Microbiol | 10.1111/jam.15707 | 2022 | *Actinobacteria/genetics/metabolism, Coloring Agents/metabolism, Escherichia coli/genetics/metabolism, *Peroxidases/genetics/metabolism, Recombinant Proteins/metabolism, Streptomyces, Xenobiotics/metabolism |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
10312 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41447) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41447 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
68379 | Automatically annotated from API Coryne | |||
68382 | Automatically annotated from API zym | |||
69277 | Wink, J. | https://cdn.dsmz.de/wink/DSM%2041447.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
84186 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50000.1 | StrainInfo: A central database for resolving microbial strain identifiers |