Strain identifier

BacDive ID: 15080

Type strain: No

Species: Streptomyces chartreusis

Strain history: <- NRRL

NCBI tax ID(s): 1079985 (strain), 1969 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 10312

BacDive-ID: 15080

DSM-Number: 41447

keywords: genome sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces chartreusis DSM 41447 is a spore-forming, mesophilic bacterium that builds an aerial mycelium.

NCBI tax id

NCBI tax idMatching level
1079985strain
1969species

strain history

  • @ref: 10312
  • history: <- NRRL

doi: 10.13145/bacdive15080.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces chartreusis
  • full scientific name: Streptomyces chartreusis Leach et al. 1953 (Approved Lists 1980)

@ref: 10312

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces chartreusis

full scientific name: Streptomyces chartreusis Leach et al. 1953

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.795
69480100positive

colony morphology

@refcolony colormedium used
69277Sand yellow (1002)ISP 2
69277Sand yellow (1002)ISP 3
69277Sand yellow (1002)ISP 4
69277Sand yellow (1002)ISP 6
69277Sand yellow (1002)suter with tyrosine
69277Sand yellow (1002)suter without tyrosine
69277Sand yellow (1002), Beige (1001)ISP 7
69277Sand yellow (1002), Light ivory (1015)ISP 5

multicellular morphology

@refforms multicellular complexcomplex namemedium namecomplex color
69277noAerial myceliumISP 2
69277yesAerial myceliumISP 3Signal white (9003), squirrel grey (7000)
69277yesAerial myceliumISP 4Grey white (9002)
69277noAerial myceliumISP 5
69277noAerial myceliumISP 6
69277yesAerial myceliumISP 7Light ivory (1015), agate grey (7038)
69277yesAerial myceliumsuter with tyrosineLight ivory (1015)
69277yesAerial myceliumsuter without tyrosineLight ivory (1015)

pigmentation

@refproductionnamecolor
69277noMelanin
69277yessoluble pigmentOchre yellow (1024)

multimedia

@refmultimedia contentcaptionintellectual property rights
10312https://www.dsmz.de/microorganisms/photos/DSM_41447.jpgMedium 84 28°C© Leibniz-Institut DSMZ
69277DSM_41447_image6.jpeg(ISP6, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69277DSM_41447_image7.jpeg(SSM+T, SSM-T)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 10312
  • name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/84
  • composition: Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

  • @ref: 10312
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

halophily

  • @ref: 69277
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6927722599arabinose+growth
6927762968cellulose-growth
6927728757fructose+growth
6927717234glucose+growth
6927717268inositol+growth
6927737684mannose+growth
6927716634raffinose+growth
6927726546rhamnose+growth
6927717992sucrose+growth
6927718222xylose+growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea+hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase+
68379urease+3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase lipase (C 8)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69277---+-++--++--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69277++/--+/-+++/-++++-+/--++/-+--

Safety information

risk assessment

  • @ref: 10312
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces chartreusis NRRL 3882 NRRL3882GCA_900236475completencbi1079985
66792Streptomyces chartreusis NRRL 3882 NRRL3882GCA_900236505completencbi1079985
66792Streptomyces chartreusis NRRL 3882GCA_000226435scaffoldncbi1079985
66792Streptomyces chartreusis NRRL 38821079985.4wgspatric1079985
66792Streptomyces chartreusis NRRL 3882 strain NRRL38821079985.10completepatric1079985
66792Streptomyces chartreusis NRRL 3882 strain NRRL38821079985.11completepatric1079985
66792Streptomyces chartreusis NRRL 38822582581677draftimg1079985
66792Streptomyces chartreusis NRRL 38822547132121draftimg1079985
66792Streptomyces chartreusis NRRL 38822582581678draftimg1079985
66792Streptomyces chartreusis NRRL 38822582581679draftimg1079985

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.837no
gram-positiveyes86.83no
anaerobicno98.806no
aerobicyes93.634no
halophileno90.337no
spore-formingyes94.668no
thermophileno97.032yes
glucose-utilyes89.516yes
motileno93.885no
glucose-fermentno89.871yes

External links

@ref: 10312

culture collection no.: DSM 41447, NRRL 3882

straininfo link

  • @ref: 84186
  • straininfo: 50000

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism21173184Characterization of the biosynthesis gene cluster for the pyrrole polyether antibiotic calcimycin (A23187) in Streptomyces chartreusis NRRL 3882.Wu Q, Liang J, Lin S, Zhou X, Bai L, Deng Z, Wang ZAntimicrob Agents Chemother10.1128/AAC.01130-102010Amino Acid Sequence, Anti-Bacterial Agents/*biosynthesis, Bacterial Proteins/chemistry/genetics/metabolism, Calcimycin/*biosynthesis/chemistry, Molecular Sequence Data, Molecular Structure, Sequence Homology, Amino Acid, Streptomyces/genetics/*metabolismGenetics
Genetics22123769Genome sequences of three tunicamycin-producing Streptomyces Strains, S. chartreusis NRRL 12338, S. chartreusis NRRL 3882, and S. lysosuperificus ATCC 31396.Doroghazi JR, Ju KS, Brown DW, Labeda DP, Deng Z, Metcalf WW, Chen W, Price NPJ Bacteriol10.1128/JB.06262-112011Anti-Bacterial Agents/*metabolism, Base Sequence, Cephalosporins/metabolism, *Genome, Bacterial, Molecular Sequence Data, Streptomyces/*genetics/metabolism, Tunicamycin/*biosynthesisMetabolism
Metabolism23583975Characterization of the N-methyltransferase CalM involved in calcimycin biosynthesis by Streptomyces chartreusis NRRL 3882.Wu Q, Gou L, Lin S, Liang J, Yin J, Zhou X, Bai L, An D, Deng Z, Wang ZBiochimie10.1016/j.biochi.2013.03.0142013Amino Acid Sequence, Bacterial Proteins/*chemistry/genetics/metabolism, Base Sequence, Calcimycin/*biosynthesis, Kinetics, Methyltransferases/*chemistry/genetics/metabolism, Molecular Sequence Data, Multigene Family, Streptomyces/*enzymology/metabolismEnzymology
29238338A Novel TetR Family Transcriptional Regulator, CalR3, Negatively Controls Calcimycin Biosynthesis in Streptomyces chartreusis NRRL 3882.Gou L, Han T, Wang X, Ge J, Liu W, Hu F, Wang ZFront Microbiol10.3389/fmicb.2017.023712017
Metabolism29463727The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry.Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JEProc Natl Acad Sci U S A10.1073/pnas.17157131152018Anti-Bacterial Agents/chemistry/metabolism, Deferoxamine/chemistry/metabolism, Metabolic Networks and Pathways, Metabolome/*physiology, Metabolomics, Models, Molecular, *Siderophores/chemistry/metabolism, Streptomyces/*chemistry/*metabolism
Metabolism29654174Cezomycin Is Activated by CalC to Its Ester Form for Further Biosynthesis Steps in the Production of Calcimycin in Streptomyces chartreusis NRRL 3882.Wu H, Liang J, Wang J, Liang WJ, Gou L, Wu Q, Zhou X, Bruce IJ, Deng Z, Wang ZAppl Environ Microbiol10.1128/AEM.00586-182018Bacterial Proteins/genetics/*metabolism, Biosynthetic Pathways, Calcimycin/*analogs & derivatives/*biosynthesis/metabolism, Esters/*metabolism, Mutation, Pyrophosphatases/genetics/metabolism, Streptomyces/*enzymology/geneticsBiotechnology
Metabolism29654175Recycling of Overactivated Acyls by a Type II Thioesterase during Calcimycin Biosynthesis in Streptomyces chartreusis NRRL 3882.Wu H, Liang J, Gou L, Wu Q, Liang WJ, Zhou X, Bruce IJ, Deng Z, Wang ZAppl Environ Microbiol10.1128/AEM.00587-182018Acyl Coenzyme A/metabolism, Anti-Bacterial Agents/biosynthesis, Bacterial Proteins/genetics/*metabolism, Biosynthetic Pathways, Calcimycin/analogs & derivatives/*biosynthesis, Fatty Acid Synthases/genetics/*metabolism, Multigene Family, Streptomyces/*enzymology/genetics, Thiolester Hydrolases/genetics/*metabolismEnzymology
Phylogeny30928538Discovery of three novel sesquiterpene synthases from Streptomyces chartreusis NRRL 3882 and crystal structure of an alpha-eudesmol synthase.Kracht ON, Correia Cordeiro RS, Hakansson M, Stockmann J, Sander D, Bandow J, Senges CHR, Logan DT, Kourist RJ Biotechnol10.1016/j.jbiotec.2019.03.0062019Alkyl and Aryl Transferases/*chemistry, Crystallography, X-Ray, Dynamic Light Scattering, Genetic Association Studies, Models, Molecular, Phylogeny, Sesquiterpenes, Eudesmane/chemistry/*metabolism, Streptomyces/*enzymology/geneticsMetabolism
Metabolism31317529Synthesis of cinnabarinic acid by metabolically engineered Pseudomonas chlororaphis GP72.Yue SJ, Song C, Li S, Huang P, Guo SQ, Hu HB, Wang W, Zhang XHBiotechnol Bioeng10.1002/bit.271182019*Bacterial Proteins/biosynthesis/genetics, *Biosynthetic Pathways, *Gene Expression Regulation, Bacterial, *Metabolic Engineering, Oxazines/*metabolism, *Pseudomonas chlororaphis/genetics/metabolism
Proteome34444489Influence of Amino Acid Feeding on Production of Calcimycin and Analogs in Streptomyces chartreusis.Arend KI, Bandow JEInt J Environ Res Public Health10.3390/ijerph181687402021*Amino Acids, Calcimycin, Chromatography, Liquid, Streptomyces, *Tandem Mass SpectrometryBiotechnology
Metabolism35808848Characterization of three novel DyP-type peroxidases from Streptomyces chartreusis NRRL 3882.Yayci A, Bachmann N, Dirks T, Hofmann E, Bandow JEJ Appl Microbiol10.1111/jam.157072022*Actinobacteria/genetics/metabolism, Coloring Agents/metabolism, Escherichia coli/genetics/metabolism, *Peroxidases/genetics/metabolism, Recombinant Proteins/metabolism, Streptomyces, Xenobiotics/metabolism

Reference

@idauthorscataloguedoi/urltitle
10312Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41447)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41447
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69277Wink, J.https://cdn.dsmz.de/wink/DSM%2041447.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84186Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50000.1StrainInfo: A central database for resolving microbial strain identifiers