Strain identifier

BacDive ID: 150752

Type strain: No

Species: Desulfovibrio sp.

NCBI tax ID(s): 885 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 8.1 (current version)

General

@ref: 55356

BacDive-ID: 150752

keywords: Bacteria, anaerobe, mesophilic

description: Desulfovibrio sp. CCUG 42192 is an anaerobe, mesophilic bacterium that was isolated from Clay 30% and crushed rock 70%.

NCBI tax id

  • NCBI tax id: 885
  • Matching level: species

doi: 10.13145/bacdive150752.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfovibrionales
  • family: Desulfovibrionaceae
  • genus: Desulfovibrio
  • species: Desulfovibrio sp.
  • full scientific name: Desulfovibrio Kluyver and van Niel 1936 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Alteridesulfovibrio
    20215Frigididesulfovibrio
    20215Desulfomonas
    20215Psychrodesulfovibrio
    20215Aminidesulfovibrio

@ref: 55356

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Desulfovibrio

species: Desulfovibrio sp.

type strain: no

Culture and growth conditions

culture temp

  • @ref: 55356
  • growth: positive
  • type: growth
  • temperature: 30-37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 55356
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    55356C9:00.89
    55356C10:02.410
    55356C11:04.211
    55356C13:01.513
    55356C14:01.914
    55356C15:07.215
    55356C16:02.616
    55356C17:01.117
    55356C11:0 3OH3.812.441
    55356C11:0 iso4.310.605
    55356C12:0 3OH3.413.455
    55356C13:0 3OH/C15:1 i I/H8.814.469
    55356C13:0 iso0.512.612
    55356C13:0 ISO 2OH0.713.814
    55356C13:0 ISO 3OH1.214.11
    55356C14:0 ISO 3OH3.315.117
    55356C15:0 ISO0.714.621
    55356C15:1 ω8c20.814.792
    55356C16:1 ω7c0.815.819
    55356C16:1 ω7c/C15:0 ISO 2OH1.215.85
    55356C16:1 ω9c4.915.774
    55356C17:1 ω6c0.616.862
    55356C17:1 ω8c3.316.792
    55356C18:1 ω9c1.117.769
    55356C18:2 ω6,9c/C18:0 ANTE2.417.724
    55356Unidentified0.710.243
    55356Unidentified1.210.912
    55356Unidentified1.211.252
    55356Unidentified1.111.661
    55356Unidentified1.812.675
    55356Unidentified1.813.321
    55356Unidentified1.313.684
    55356Unidentified0.714.279
    55356Unidentified1.315.285
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
55356-----------------------------

Isolation, sampling and environmental information

isolation

  • @ref: 55356
  • sample type: Clay (bentonite) 30% and crushed rock 70%
  • sampling date: 1999
  • geographic location: Oskarshamn
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

External links

@ref: 55356

culture collection no.: CCUG 42192

straininfo link

  • @ref: 104966
  • straininfo: 409291

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
55356Curators of the CCUGhttps://www.ccug.se/strain?id=42192Culture Collection University of Gothenburg (CCUG) (CCUG 42192)
68380Automatically annotated from API rID32A
104966Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID409291.1