Strain identifier

BacDive ID: 15068

Type strain: Yes

Species: Streptomyces canus

Strain Designation: 456786

Strain history: KCC S-0212 <-- IFM 1092 <-- Bristol Labs.; BL 456786.

NCBI tax ID(s): 58343 (species)

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General

@ref: 9218

BacDive-ID: 15068

DSM-Number: 40017

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces canus 456786 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 58343
  • Matching level: species

strain history

@refhistory
9218<- E.B. Shirling, ISP <- K.E. Crook, Bristol Labs., 456786
67770KCC S-0212 <-- IFM 1092 <-- Bristol Labs.; BL 456786.

doi: 10.13145/bacdive15068.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces canus
  • full scientific name: Streptomyces canus Heinemann et al. 1953 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Streptomyces ciscaucasicus

@ref: 9218

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces canus

full scientific name: Streptomyces canus Heinemann et al. 1953 emend. Nouioui et al. 2018

strain designation: 456786

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no91.565
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9218GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9218ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
9218STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
9218ISP 5 MEDIUM (DSMZ Medium 993)yeshttps://mediadive.dsmz.de/medium/993Name: ISP 5 MEDIUM (DSMZ Medium 993) Composition: Agar 20.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l L-Asparagine 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18465positiveoptimum28mesophilic
9218positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9218amphomycin
20216Amphomycin

halophily

  • @ref: 18465
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1846517234glucose+
1846522599arabinose+
1846517992sucrose+
1846518222xylose-
1846517268myo-inositol-
1846529864mannitol+
1846528757fructose+
1846526546rhamnose+
1846516634raffinose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refmetaboliteproductionChebi-ID
67770amphomycinyes
68368acetoinno15688
68368indoleno35581
68368hydrogen sulfideno16136

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18465++--+-----+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
9218soilUSAUSANorth America
67770SoilUSAUSANorth Americanear Syracuse, NY

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
92181Risk group (German classification)
184651German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces canus 16S-23S ribosomal RNA gene spacer, partial sequenceU93344302ena58343
20218Streptomyces canus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4569D44238120ena58343
20218Streptomyces canus gene for 16S rRNA, partial sequence, strain: NBRC 12752AB1841181477ena58343
20218Streptomyces canus strain NRRL B-1989 16S ribosomal RNA gene, partial sequenceAY9997751494ena58343

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces canus strain DSM 4001758343.3wgspatric58343
66792Streptomyces canus DSM 400172684622646draftimg58343
67770Streptomyces canus DSM 40017GCA_001514145scaffoldncbi58343

GC content

  • @ref: 67770
  • GC-content: 70.2
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes86.841no
anaerobicno98.876no
halophileno94.05no
spore-formingyes94.238no
glucose-utilyes89.202yes
thermophileno99.286no
flagellatedno97.684no
aerobicyes90.591no
motileno93.055no
glucose-fermentno89.167no

External links

@ref: 9218

culture collection no.: DSM 40017, ATCC 12237, CBS 475.68, IFO 12752, ISP 5017, NBRC 12752, RIA 1017, JCM 4212, ATCC 19737, BCRC 13652, CGMCC 4.1468, IFM 1092, JCM 4569, LMG 19329, NCIMB 9627, NRRL B-1989, NRRL B-3980, VKM Ac-1011

straininfo link

  • @ref: 84174
  • straininfo: 128968

literature

  • topic: Phylogeny
  • Pubmed-ID: 22888189
  • title: Streptomyces ziwulingensis sp. nov., isolated from grassland soil.
  • authors: Lin YB, Wang XY, Wang TT, An SS, Shi P, Wei GH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.043026-0
  • year: 2012
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Poaceae, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analysis
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9218Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40017)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40017
18465Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40017.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84174Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID128968.1StrainInfo: A central database for resolving microbial strain identifiers