Strain identifier

BacDive ID: 150673

Type strain: No

Species: Porphyromonas macacae

Strain history: STAFF <-- ATCC 49407 <-- NCTC 11632 <-- D. N. Love.

NCBI tax ID(s): 1236521 (strain), 28115 (species)

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General

@ref: 55268

BacDive-ID: 150673

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Porphyromonas macacae CCUG 41933 is an anaerobe, mesophilic bacterium that was isolated from Subcutaneous abscess of cat.

NCBI tax id

NCBI tax idMatching level
1236521strain
28115species

strain history

  • @ref: 67770
  • history: STAFF <-- ATCC 49407 <-- NCTC 11632 <-- D. N. Love.

doi: 10.13145/bacdive150673.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Porphyromonadaceae
  • genus: Porphyromonas
  • species: Porphyromonas macacae
  • full scientific name: Porphyromonas macacae (Slots and Genco 1980) Love 1995

  • synonyms

    @refsynonym
    20215Porphyromonas salivosa
    20215Bacteroides salivosus
    20215Bacteroides melaninogenicus subsp. macacae
    20215Bacteroides macacae

@ref: 55268

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Porphyromonadaceae

genus: Porphyromonas

species: Porphyromonas macacae

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.562
6948099.988negative

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
55268positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
55268anaerobe
69480anaerobe99.496

spore formation

@refspore formationconfidence
69480no99.998
69481no100

Isolation, sampling and environmental information

isolation

@refsample type
55268Subcutaneous abscess of cat
67770Soft-tissue infections and normal gingival margins from cats

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Felidae (Cat)
#Host Body-Site#Other#Wound
#Host Body-Site#Organ#Skin, Nail, Hair

taxonmaps

  • @ref: 69479
  • File name: preview.99_2349.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17049;96_1269;97_1504;98_1831;99_2349&stattab=map
  • Last taxonomy: Porphyromonas macacae subclade
  • 16S sequence: AB547666
  • Sequence Identity:
  • Total samples: 3731
  • soil counts: 91
  • aquatic counts: 93
  • animal counts: 3500
  • plant counts: 47

Sequence information

16S sequences

  • @ref: 67770
  • description: Porphyromonas macacae gene for 16S ribosomal RNA, partial sequence, strain: JCM 15984
  • accession: AB547666
  • length: 1493
  • database: ena
  • NCBI tax ID: 28115

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Porphyromonas macacae JCM 159841236521.3wgspatric1236521
66792Porphyromonas macacae strain NCTC1163228115.12wgspatric28115
66792Porphyromonas macacae NCTC 116322814123386draftimg28115
66792Porphyromonas macacae JCM 159842585427890draftimg1236521
67770Porphyromonas macacae JCM 15984GCA_000614385contigncbi1236521
67770Porphyromonas macacae NCTC11632GCA_900454765contigncbi28115

GC content

  • @ref: 67770
  • GC-content: 42
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno88.748no
gram-positiveno96.515no
anaerobicyes98.476yes
aerobicno97.768yes
halophileno84.994no
spore-formingno95.503no
glucose-utilyes79.205no
flagellatedno95.283no
thermophileno98.723no
glucose-fermentno59.712no

External links

@ref: 55268

culture collection no.: CCUG 41933, ATCC 49407, NCTC 11632, JCM 15984, CCUG 33478, VPB 157

straininfo link

  • @ref: 104893
  • straininfo: 46879

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny7981094Porphyromonas gingivicanis sp. nov. and Porphyromonas crevioricanis sp. nov., isolated from beagles.Hirasawa M, Takada KInt J Syst Bacteriol10.1099/00207713-44-4-6371994Animals, DNA, Bacterial/analysis, Dogs/*microbiology, Gingiva/microbiology, Porphyromonas/genetics/*isolation & purification/metabolismEnzymology
Enzymology11240101Serum antibody responses of cats to soluble whole cell antigens and isolated fimbriae of feline Porphyromonas salivosa (macacae) and associations with periodontal disease.Norris JM, Love DNVet Microbiol10.1016/s0378-1135(00)00361-82001Animals, Antibodies, Bacterial/*biosynthesis/blood/immunology, Antigens, Bacterial/*immunology, Bacterial Proteins/immunology, Bacteroides Infections/immunology/microbiology/*veterinary, Blotting, Western/veterinary, Cat Diseases/*immunology/microbiology, Cats, Electrophoresis, Polyacrylamide Gel/veterinary, Female, Fimbriae, Bacterial/immunology, Male, Periodontal Diseases/immunology/microbiology/*veterinary, Porphyromonas/*immunology/isolation & purificationPhylogeny
Pathogenicity31019151Purification and characterization of a fimbrial protein from Porphyromonas salivosa ATCC 49407.Koyata Y, Watanabe K, Toyama T, Sasaki H, Hamada NJ Vet Med Sci10.1292/jvms.19-00672019Amino Acid Sequence, Animals, Antibodies, Bacterial, Cells, Cultured, Epithelial Cells, Fimbriae Proteins/chemistry, Fimbriae, Bacterial/*chemistry, Gingiva, Humans, Mice, Inbred BALB C, Microscopy, Electron, Periodontal Diseases/microbiology/veterinary, Porphyromonas/*chemistry/ultrastructureEnzymology

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
55268Curators of the CCUGhttps://www.ccug.se/strain?id=41933Culture Collection University of Gothenburg (CCUG) (CCUG 41933)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
104893Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID46879.1