Strain identifier

BacDive ID: 15062

Type strain: Yes

Species: Streptomyces caelestis

Strain history: KCC S-0218 <-- NRRL 2418 <-- Upjohn Co., USA; UC 2011 (=D-52).

NCBI tax ID(s): 36816 (species)

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General

@ref: 9297

BacDive-ID: 15062

DSM-Number: 40084

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces caelestis DSM 40084 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 36816
  • Matching level: species

strain history

@refhistory
9297<- E.B. Shirling, ISP <- NRRL <- A. Dietz, Upjohn Co., UC 2011
67770KCC S-0218 <-- NRRL 2418 <-- Upjohn Co., USA; UC 2011 (=D-52).

doi: 10.13145/bacdive15062.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces caelestis
  • full scientific name: Streptomyces caelestis De Boer et al. 1955 (Approved Lists 1980)

@ref: 9297

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces caelestis

full scientific name: Streptomyces caelestis De Boer et al. 1955

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.526
69480100positive

multimedia

  • @ref: 9297
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40084.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9297GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9297ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
18528positiveoptimum30mesophilic
9297positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9297caelesticetin
9297celesticetin
20216Celesticetin

halophily

  • @ref: 18528
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1852817234glucose+
1852822599arabinose+
1852817992sucrose+
1852818222xylose-
1852817268myo-inositol+
1852829864mannitol-
1852828757fructose+
1852826546rhamnose+
1852816634raffinose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
67770156421celesticetinyes
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase+4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18528+---++-+--+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
9297soilUtahUSAUSANorth America
67770Soil from Emigration CanyonSalt Lake City, UTUSAUSANorth America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_6264.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_1662;99_6264&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: X80824
  • Sequence Identity:
  • Total samples: 166
  • soil counts: 112
  • aquatic counts: 2
  • animal counts: 49
  • plant counts: 3

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
92971Risk group (German classification)
185281German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces caelestis partial 16S rRNA gene, strain ISP 5084AJ3994671448ena36816
20218Streptomyces caelestis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4566D44235121ena36816
20218Streptomyces caelestis gene for 16S rRNA, partial sequence, strain: NBRC 12749AB1848381480ena36816
20218Streptomyces caelestis 16S rRNA geneX808241518ena36816

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces caelestis JCM 4566GCA_014650295scaffoldncbi36816
66792Streptomyces caelestis DSM 40084GCA_014205255contigncbi36816
66792Streptomyces caelestis strain DSM 4008436816.5wgspatric36816
66792Streptomyces caelestis strain JCM 456636816.6wgspatric36816
66792Streptomyces caelestis DSM 400842873322191draftimg36816

GC content

  • @ref: 67770
  • GC-content: 71.3
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.787no
gram-positiveyes87.112no
anaerobicno98.854no
aerobicyes93.776no
halophileno93.172no
spore-formingyes95.895no
glucose-utilyes89.323no
thermophileno96.791yes
motileno93.895no
glucose-fermentno90.519no

External links

@ref: 9297

culture collection no.: DSM 40084, ATCC 14924, ATCC 15084, CBS 472.68, ETH 24258, IFO 12749, ISP 5084, NBRC 12749, NRRL 2418, RIA 1014, UC 2011, JCM 4218, ATCC 19733, BCRC 13685, CBS 967.70, CGMCC 4.1529, CGMCC 4.1688, IMET 43502, JCM 4566, LMG 5970, LMG 8586, NCIMB 9751, VKM Ac-1822

straininfo link

  • @ref: 84168
  • straininfo: 5011

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism18298040Glucosylglycerate is an osmotic solute and an extracellular metabolite produced by Streptomyces caelestis.Pospisl S, Halada P, Petricek M, Sedmera PFolia Microbiol (Praha)10.1007/BF029321032007Culture Media/chemistry, Disaccharides/isolation & purification, Extracellular Space/*chemistry/metabolism, Glyceric Acids/agonists/chemistry/isolation & purification/*metabolism, Glycosylation, Magnetic Resonance Spectroscopy, Osmolar Concentration, Osmosis, Streptomyces/chemistry/*metabolism, Trehalose/chemistry/isolation & purification/metabolism, *Water-Electrolyte BalanceEnzymology
Phylogeny29110155Streptomyces swartbergensis sp. nov., a novel tyrosinase and antibiotic producing actinobacterium.le Roes-Hill M, Prins A, Meyers PRAntonie Van Leeuwenhoek10.1007/s10482-017-0979-32017Anti-Bacterial Agents/*biosynthesis/isolation & purification/pharmacology, Bacteria/drug effects, DNA Gyrase/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Glycolipids/analysis, Melanins/analysis, Monophenol Monooxygenase/*biosynthesis, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Soil Microbiology, South Africa, Streptomyces/chemistry/*classification/enzymology/genetics, Vitamin K 2/analysisEnzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9297Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40084)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40084
18528Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40084.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84168Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID5011.1StrainInfo: A central database for resolving microbial strain identifiers