Strain identifier
BacDive ID: 15058
Type strain: 
Species: Streptomyces cacaoi
Strain history: KCC S-0352 <-- IFO 12748 <-- SAJ <-- ISP 5057 <-- IMRU 3082.
NCBI tax ID(s): 1898 (species)
version 8.1 (current version)
General
@ref: 9240
BacDive-ID: 15058
DSM-Number: 40057
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Streptomyces cacaoi DSM 40057 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from from cacao-beans.
NCBI tax id
- NCBI tax id: 1898
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9240 | <- E.B. Shirling, ISP <- S.A. Waksman, IMRU |
| 67770 | KCC S-0352 <-- IFO 12748 <-- SAJ <-- ISP 5057 <-- IMRU 3082. |
doi: 10.13145/bacdive15058.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces cacaoi
- full scientific name: Streptomyces cacaoi (Waksman 1932) Waksman and Henrici 1948 (Approved Lists 1980)
synonyms
@ref synonym 20215 Actinomyces cacaoi 20215 Streptomyces aminophilus
@ref: 9240
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces cacaoi subsp. cacaoi
full scientific name: Streptomyces cacaoi subsp. cacaoi (Waksman 1932) Isono et al. 1965 emend. Lanoot et al. 2002
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
multimedia
- @ref: 9240
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40057.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9240 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 9240 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9240 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 9240
- sample type: from cacao-beans
- country: Nigeria
- origin.country: NGA
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant | #Fruit (Seed) |
Safety information
risk assessment
- @ref: 9240
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces cacaoi subsp. cacaoi gene for 16S rRNA, partial sequence | AB122771 | 565 | ena | 66857 |
| 20218 | Streptomyces cacaoi subsp. cacaoi gene for 16S ribosomal RNA, partial sequence, strain: JCM 4352 | D44070 | 121 | ena | 66857 |
| 20218 | Streptomyces cacaoi subsp. cacaoi strain KCTC 9758 16S ribosomal RNA gene, partial sequence | AY999819 | 1419 | ena | 66857 |
| 20218 | Streptomyces cacaoi subsp. cacaoi gene for 16S rRNA, partial sequence, strain: NBRC 12748 | AB184115 | 1479 | ena | 66857 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces cacaoi strain DSM 40057 | 1898.4 | wgs | patric | 1898 |
| 66792 | Streptomyces cacaoi subsp. cacaoi strain NBRC 12748 | 66857.5 | wgs | patric | 66857 |
| 67770 | Streptomyces cacaoi NBRC 12748 | GCA_006539165 | contig | ncbi | 1898 |
| 67770 | Streptomyces cacaoi DSM 40057 | GCA_013004455 | contig | ncbi | 1898 |
| 67770 | Streptomyces cacaoi NRRL B-1220 | GCA_002154495 | scaffold | ncbi | 1898 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 94.209 | no |
| gram-positive | yes | 90.716 | no |
| anaerobic | no | 99.389 | no |
| aerobic | yes | 95.07 | no |
| halophile | no | 81.358 | no |
| spore-forming | yes | 94.016 | no |
| glucose-util | yes | 89.869 | no |
| flagellated | no | 98.061 | no |
| thermophile | no | 97.763 | yes |
| glucose-ferment | no | 89.92 | no |
External links
@ref: 9240
culture collection no.: DSM 40057, ATCC 19732, ATCC 3082, CBS 471.68, ETH 14304, IFO 12748, IMRU 3082, ISP 5057, KCC S-0352, NBRC 12748, RIA 1013, RIA 94, JCM 4352, BCRC 12103, CGMCC 4.1466, IMET 40260, LMG 19320, NCIMB 9626, NRRL B-1220, NRRL B-2686, VKM Ac-733
straininfo link
- @ref: 84164
- straininfo: 13338
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Pathogenicity | 6820018 | Mechanisms of acquired penicillin-resistance in Streptomyces cacaoi. Role of penicillin-binding proteins in penicillin resistant mutants. | Nakazawa H, Ogawara H | J Antibiot (Tokyo) | 10.7164/antibiotics.35.1683 | 1982 | *Bacterial Proteins, Carrier Proteins/*physiology, Chemical Phenomena, Chemistry, Drug Interactions, Edetic Acid/pharmacology, *Hexosyltransferases, *Muramoylpentapeptide Carboxypeptidase, Mutation, Octoxynol, Penicillin G/pharmacology, *Penicillin Resistance, Penicillin-Binding Proteins, *Peptidyl Transferases, Polyethylene Glycols/pharmacology, Streptomyces/*drug effects/metabolism | Metabolism |
| Phylogeny | 12054245 | The search for synonyms among streptomycetes by using SDS-PAGE of whole-cell proteins. Emendation of the species Streptomyces aurantiacus, Streptomyces cacaoi subsp. cacaoi, Streptomyces caeruleus and Streptomyces violaceus. | Lanoot B, Vancanneyt M, Cleenwerck I, Wang L, Li W, Liu Z, Swings J | Int J Syst Evol Microbiol | 10.1099/00207713-52-3-823 | 2002 | Bacterial Proteins/*analysis, Bacterial Typing Techniques, Electrophoresis, Polyacrylamide Gel, Nucleic Acid Hybridization, Phenotype, Species Specificity, Streptomyces/*chemistry/*classification/genetics | Enzymology |
| Phylogeny | 18984700 | Streptomyces specialis sp. nov. | Kampfer P, Huber B, Buczolits S, Thummes K, Grun-Wollny I, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.2008/001008-0 | 2008 | Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Streptomyces/*classification/genetics/isolation & purification/physiology | Genetics |
| Phylogeny | 19329599 | Streptomyces nanshensis sp. nov., isolated from the Nansha Islands in the South China Sea. | Tian XP, Zhang YQ, Li QX, Zhi XY, Tang SK, Zhang S, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.003442-0 | 2009 | Bacterial Typing Techniques, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Streptomyces/*classification/genetics/*isolation & purification/physiology, Vitamin K 2/analysis | Genetics |
| Phylogeny | 24944339 | Streptomyces iconiensis sp. nov. and Streptomyces smyrnaeus sp. nov., two halotolerant actinomycetes isolated from a salt lake and saltern. | Tatar D, Guven K, Sproer C, Klenk HP, Sahin N | Int J Syst Evol Microbiol | 10.1099/ijs.0.062216-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/microbiology, Lakes, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, Streptomyces/*classification/genetics/isolation & purification, Turkey, Vitamin K 2/analogs & derivatives/chemistry, *Water Microbiology | Genetics |
| Phylogeny | 31919422 | Isolation and structure determination of a new antibacterial peptide pentaminomycin C from Streptomyces cacaoi subsp. cacaoi. | Kaweewan I, Hemmi H, Komaki H, Kodani S | J Antibiot (Tokyo) | 10.1038/s41429-019-0272-y | 2020 | Anti-Bacterial Agents/chemistry/*isolation & purification/pharmacology, Gram-Positive Bacteria/*drug effects, Magnetic Resonance Spectroscopy, Multigene Family, Spectrometry, Mass, Electrospray Ionization, Streptomyces/*chemistry/genetics | Enzymology |
| 34589300 | Apis andreniformis associated Actinomycetes show antimicrobial activity against black rot pathogen (Xanthomonas campestris pv. campestris). | Promnuan Y, Promsai S, Pathom-Aree W, Meelai S | PeerJ | 10.7717/peerj.12097 | 2021 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9240 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40057) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40057 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 84164 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13338.1 | StrainInfo: A central database for resolving microbial strain identifiers |