Strain identifier

BacDive ID: 150576

Type strain: No

Species: Clostridium perfringens

NCBI tax ID(s): 1502 (species)

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General

@ref: 55155

BacDive-ID: 150576

keywords: Bacteria, anaerobe, mesophilic

description: Clostridium perfringens CCUG 41642 is an anaerobe, mesophilic bacterium that was isolated from Human lung,patient diseased in food poisoning.

NCBI tax id

  • NCBI tax id: 1502
  • Matching level: species

doi: 10.13145/bacdive150576.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium perfringens
  • full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus perfringens

@ref: 55155

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Clostridiaceae

genus: Clostridium

species: Clostridium perfringens

type strain: no

Culture and growth conditions

culture temp

  • @ref: 55155
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 55155
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose+fermentation
6838029985L-glutamate-degradation
6838017632nitrate+reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase+3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate+
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    55155C10:00.910
    55155C11:00.611
    55155C12:01912
    55155C13:0213
    55155C14:010.714
    55155C16:05.116
    55155C18:04.818
    55155C19:02.219
    55155C20:03.420
    55155C13:0 3OH/C15:1 i I/H1.814.469
    55155C13:0 ISO 2OH1.313.814
    55155C13:1 at 12-130.512.931
    55155C16:1 ISO H0.415.461
    55155C16:1 ω7c0.715.819
    55155C16:1 ω9c1.115.774
    55155C17:0 CYCLO0.616.888
    55155C17:1 ISO I/C16:0 DMA6.616.481
    55155C18:1 ω9c2.917.769
    55155C18:2 ω6,9c/C18:0 ANTE8.617.724
    55155C19:0 CYCLO ω8c1.118.9
    55155C19:0 CYCLO ω9c0.918.87
    55155C19:1 ISO I9.318.473
    55155C20:1 ω7c2.119.833
    55155C20:1 ω9c2.119.77
    55155C20:2 ω6,9c4.419.735
    55155Unidentified0.410.727
    55155Unidentified0.913.761
    55155Unidentified1.614.945
    55155Unidentified0.516.234
    55155Unidentified0.719.315
    55155Unidentified1.119.459
    55155unknown 16.9721.916.972
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
55155-+++------++++---+--

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
55155--+++++--+++--+-++----+------

Isolation, sampling and environmental information

isolation

  • @ref: 55155
  • sample type: Human lung,patient diseased in food poisoning
  • sampling date: 1994
  • country: Norway
  • origin.country: NOR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Lung
#Infection#Patient

External links

@ref: 55155

culture collection no.: CCUG 41642

straininfo link

  • @ref: 104812
  • straininfo: 109048

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
55155Curators of the CCUGhttps://www.ccug.se/strain?id=41642Culture Collection University of Gothenburg (CCUG) (CCUG 41642)
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
104812Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID109048.1