Strain identifier

BacDive ID: 15048

Type strain: Yes

Species: Streptomyces bellus

Strain Designation: A/870

Strain history: KCC S-0292 <-- HBL A-106 <-- ISP 5185 <-- Lepetit A/870.

NCBI tax ID(s): 66873 (species)

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General

@ref: 9247

BacDive-ID: 15048

DSM-Number: 40185

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces bellus A/870 is a spore-forming, mesophilic bacterium that produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 66873
  • Matching level: species

strain history

@refhistory
9247<- E.B. Shirling, ISP <- L.G. Silvestri, Lepetit S.p.A. Lep. M. A/870
67770KCC S-0292 <-- HBL A-106 <-- ISP 5185 <-- Lepetit A/870.

doi: 10.13145/bacdive15048.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces bellus
  • full scientific name: Streptomyces bellus Margalith and Beretta 1960 (Approved Lists 1980)

@ref: 9247

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces bellus

full scientific name: Streptomyces bellus Margalith and Beretta 1960

strain designation: A/870

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.997
69480100positive

Culture and growth conditions

culture medium

  • @ref: 9247
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18552positiveoptimum28mesophilic
9247positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9247althiomycin
9247matamycin
20216Althiomycin (matamycin)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1855217234glucose+
1855222599arabinose+
1855217992sucrose+
1855218222xylose-
1855217268myo-inositol+
1855229864mannitol+
1855228757fructose+
1855226546rhamnose+
1855216634raffinose+
1855262968cellulose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
67770157683althiomycinyes
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18552+++-+++++++++-++++-

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18552+++++++--++

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
92471Risk group (German classification)
185521German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces bellus partial 16S rRNA gene, strain ISP 5185AJ3994761450ena66873
20218Streptomyces bellus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4292D44043121ena66873
20218Streptomyces bellus gene for 16S rRNA, partial sequence, strain: NBRC 12844AB1848491478ena66873

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces bellus JCM 4292GCA_014649195scaffoldncbi66873
66792Streptomyces bellus strain JCM 429266873.3wgspatric66873

GC content

  • @ref: 67770
  • GC-content: 73.5
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.36no
gram-positiveyes88.015no
anaerobicno99.063no
aerobicyes94.178no
halophileno91.061no
spore-formingyes95.14no
glucose-utilyes89.475yes
thermophileno98.213yes
motileno93.604no
glucose-fermentno89.681no

External links

@ref: 9247

culture collection no.: DSM 40185, AS 4.1376, ATCC 14925, ATCC 23886, CBS 666.68, IFO 12844, ISP 5185, JCM 4292, JCM 4625, NBRC 12844, RIA 1139, BCRC 13783, CGMCC 4.1376, IMET 42062, NCIMB 9818, NRRL B-2575, PCM 2314, VKM Ac-573

straininfo link

  • @ref: 84154
  • straininfo: 12883

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9247Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40185)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40185
18552Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40185.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84154Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID12883.1StrainInfo: A central database for resolving microbial strain identifiers