Strain identifier
version 8.1 (current version)
General
@ref: 55030
BacDive-ID: 150464
keywords: genome sequence, Bacteria
description: Staphylococcus aureus CCUG 41357 is a bacterium that was isolated from High vaginal swab.
NCBI tax id
- NCBI tax id: 1280
- Matching level: species
doi: 10.13145/bacdive150464.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Staphylococcus
- species: Staphylococcus aureus
- full scientific name: Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Staphylococcus aureus subsp. anaerobius
@ref: 55030
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus aureus
type strain: no
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68375 | 16199 | urea | - | hydrolysis |
| 68375 | 29016 | arginine | + | hydrolysis |
| 68375 | 18257 | ornithine | - | degradation |
| 68375 | 4853 | esculin | - | hydrolysis |
| 68375 | 17634 | D-glucose | + | fermentation |
| 68375 | 15824 | D-fructose | + | fermentation |
| 68375 | 16024 | D-mannose | + | fermentation |
| 68375 | 17306 | maltose | + | fermentation |
| 68375 | 17716 | lactose | + | fermentation |
| 68375 | 27082 | trehalose | + | fermentation |
| 68375 | 16899 | D-mannitol | + | fermentation |
| 68375 | 16634 | raffinose | - | fermentation |
| 68375 | 16988 | D-ribose | - | fermentation |
| 68375 | 17057 | cellobiose | - | fermentation |
| 68375 | 17632 | nitrate | + | reduction |
| 68375 | 17992 | sucrose | + | fermentation |
| 68375 | 59640 | N-acetylglucosamine | + | fermentation |
| 68375 | 32528 | turanose | + | fermentation |
| 68375 | 22599 | arabinose | - | fermentation |
antibiotic resistance
- @ref: 68375
- ChEBI: 28368
- metabolite: novobiocin
- is antibiotic: yes
- is sensitive: yes
- sensitivity conc.: 1.8 µg
metabolite production
- @ref: 68375
- Chebi-ID: 15688
- metabolite: acetoin
- production: yes
metabolite tests
- @ref: 68375
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68375 | beta-glucuronidase | - | 3.2.1.31 |
| 68375 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68375 | alkaline phosphatase | + | 3.1.3.1 |
| 68375 | L-arginine arylamidase | - | |
| 68375 | beta-galactosidase | - | 3.2.1.23 |
| 68375 | beta-glucosidase | - | 3.2.1.21 |
| 68375 | ornithine decarboxylase | - | 4.1.1.17 |
| 68375 | arginine dihydrolase | + | 3.5.3.6 |
| 68375 | urease | - | 3.5.1.5 |
API ID32STA
| @ref | URE | ADH Arg | ODC | ESC | GLU | FRU | MNE | MAL | LAC | TRE | MAN | RAF | RIB | CEL | NIT | VP | beta GAL | ArgA | PAL | PyrA | NOVO | SAC | NAG | TUR | ARA | beta GUR |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55030 | - | + | - | - | + | + | + | + | + | + | + | - | - | - | + | + | - | - | + | - | - | + | + | + | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 55030
- sample type: High vaginal swab
- sampling date: 1985
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Urogenital tract | #Vagina |
| #Infection | #Patient | #Swab |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Staphylococcus aureus NCTC11962 | GCA_900458475 | contig | ncbi | 1280 |
| 66792 | Staphylococcus aureus strain NCTC11962 | 1280.18128 | wgs | patric | 1280 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 89.871 | no |
| gram-positive | yes | 89.104 | no |
| anaerobic | no | 99.568 | no |
| aerobic | yes | 90.277 | no |
| halophile | yes | 92.339 | no |
| spore-forming | no | 93.6 | no |
| glucose-util | yes | 89.888 | no |
| flagellated | no | 91.164 | no |
| thermophile | no | 99.652 | no |
| glucose-ferment | yes | 84.962 | yes |
External links
@ref: 55030
culture collection no.: CCUG 41357, NCTC 11962
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 55030 | Curators of the CCUG | https://www.ccug.se/strain?id=41357 | Culture Collection University of Gothenburg (CCUG) (CCUG 41357) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68375 | Automatically annotated from API ID32STA |