Strain identifier

BacDive ID: 15038

Type strain: Yes

Species: Streptomyces aureus

Strain Designation: B7319

Strain history: CIP <- 2003, NCIMB <- M. Goodfellow, Newcastle Univ., Newcastle, UK: strain B7319

NCBI tax ID(s): 193461 (species)

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General

@ref: 10570

BacDive-ID: 15038

DSM-Number: 41785

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Streptomyces aureus B7319 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from soil from hay plots.

NCBI tax id

  • NCBI tax id: 193461
  • Matching level: species

strain history

@refhistory
10570<- M. Goodfellow, Univ. Newcastle; B7319
67770NCIMB 13927 <-- M. Goodfellow B7319.
116633CIP <- 2003, NCIMB <- M. Goodfellow, Newcastle Univ., Newcastle, UK: strain B7319

doi: 10.13145/bacdive15038.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces aureus
  • full scientific name: Streptomyces aureus Manfio et al. 2003

@ref: 10570

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces aureus

full scientific name: Streptomyces aureus Manfio et al. 2003

strain designation: B7319

type strain: yes

Morphology

cell morphology

  • @ref: 116633
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 116633

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10570GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
33909MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulumyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
10570ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
116633CIP Medium 57yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=57

culture temp

@refgrowthtypetemperaturerange
10570positivegrowth28mesophilic
33909positivegrowth30mesophilic
67770positivegrowth28mesophilic
116633positivegrowth10-30
116633nogrowth37mesophilic
116633nogrowth41thermophilic
116633nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 116633
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
116633NaClpositivegrowth0 %
116633NaClnogrowth2 %
116633NaClnogrowth4 %
116633NaClnogrowth6 %
116633NaClnogrowth8 %
116633NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate-reduction
6836817634D-glucose-fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
11663316947citrate-carbon source
1166334853esculin+hydrolysis
116633606565hippurate-hydrolysis
11663317632nitrate-reduction
11663316301nitrite-reduction
11663317632nitrate-respiration

antibiotic resistance

  • @ref: 116633
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteno
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno
11663335581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin-
6836835581indole-
11663315688acetoin-
11663317234glucose-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
116633oxidase-
116633beta-galactosidase+3.2.1.23
116633alcohol dehydrogenase-1.1.1.1
116633gelatinase+
116633amylase+
116633DNase+
116633caseinase+3.4.21.50
116633catalase+1.11.1.6
116633tween esterase-
116633gamma-glutamyltransferase+2.3.2.2
116633lecithinase-
116633lipase-
116633lysine decarboxylase-4.1.1.18
116633ornithine decarboxylase-4.1.1.17
116633phenylalanine ammonia-lyase-4.3.1.24
116633protease-
116633tryptophan deaminase-
116633urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116633-+---+-----+-----+--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUNO2N2
116633--------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116633+++-+----+++-+-++-+++--++-+----+-+---------++----+++-+++-++++-+++-------+++---+++---+-+-++++-++--+-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
10570soil from hay plotsNerthhumberland, Cockle Park Experimental FarmUnited KingdomGBREurope
67770Soil from meadow hay plotsUnited KingdomGBREurope
116633Environment, Soil from hay plotsUnited KingdomGBREurope

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
105701Risk group (German classification)
1166331Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces aureus B7319 16S ribosomal RNA gene, partial sequenceAY0943681448ena193461
20218Streptomyces aureus gene for 16S rRNA, partial sequence, strain: NBRC 100912AB2499761460ena193461

GC content

@refGC-contentmethod
1057066thermal denaturation, midpoint method (Tm)
6777069thermal denaturation, midpoint method (Tm)

External links

@ref: 10570

culture collection no.: DSM 41785, NCIMB 13927, JCM 12605, CGMCC 4.1833, CIP 108188, NBRC 100912

straininfo link

  • @ref: 84144
  • straininfo: 113639

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17766883Streptomyces durmitorensis sp. nov., a producer of an FK506-like immunosuppressant.Savic M, Bratic I, Vasiljevic BInt J Syst Evol Microbiol10.1099/ijs.0.64913-02007Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer/chemistry/genetics, Genes, rRNA, Immunosuppressive Agents/*metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Polymorphism, Genetic, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolism, YugoslaviaMetabolism
Phylogeny26790712Streptomyces arcticus sp. nov., isolated from frozen soil.Zhang L, Ruan C, Peng F, Deng Z, Hong KInt J Syst Evol Microbiol10.1099/ijsem.0.0009072016

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10570Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41785)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41785
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33909Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5782
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
84144Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID113639.1StrainInfo: A central database for resolving microbial strain identifiers
116633Curators of the CIPCollection of Institut Pasteur (CIP 108188)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108188