Strain identifier
BacDive ID: 15036
Type strain:
Species: Streptomyces aureoverticillatus
Strain Designation: INMI-1077
Strain history: KCC S-0347 <-- IFO 12742 <-- SAJ <-- ISP 5080 <-- RIA 679 <-- INMI 1007.
NCBI tax ID(s): 66871 (species)
General
@ref: 9293
BacDive-ID: 15036
DSM-Number: 40080
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Streptomyces aureoverticillatus INMI-1077 is a spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 66871
- Matching level: species
strain history
@ref | history |
---|---|
9293 | <- E.B. Shirling, ISP <- V.D. Kuznetsov, RIA <- INMI |
67770 | KCC S-0347 <-- IFO 12742 <-- SAJ <-- ISP 5080 <-- RIA 679 <-- INMI 1007. |
doi: 10.13145/bacdive15036.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces aureoverticillatus
- full scientific name: Streptomyces aureoverticillatus (Krassilnikov and Yuan 1960) Pridham 1970 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Actinomyces aureoverticillatus
@ref: 9293
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces aureoverticillatus
full scientific name: Streptomyces aureoverticillatus (Krassilnikov and Yuan 1960) Pridham 1970
strain designation: INMI-1077
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 93.05 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9293 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
9293 | ISP2 MEDIUM (DSMZ Medium 987) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium987.pdf | |
9293 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18525 | positive | optimum | 30 | mesophilic |
9293 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
compound production
- @ref: 9293
- compound: aminoacylase
halophily
- @ref: 18525
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
18525 | 17234 | glucose | + | |
18525 | 22599 | arabinose | + | |
18525 | 17992 | sucrose | - | |
18525 | 18222 | xylose | - | |
18525 | 17268 | myo-inositol | +/- | |
18525 | 29864 | mannitol | + | |
18525 | 28757 | fructose | + | |
18525 | 26546 | rhamnose | - | |
18525 | 16634 | raffinose | - | |
18525 | 62968 | cellulose | - | |
68368 | 5291 | gelatin | + | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | + | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | gelatinase | + | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
18525 | + | - | - | - | - | - | + | - | - | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country |
---|---|---|---|
9293 | soil | ||
67770 | Soil | Russia | RUS |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_5503.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_287;98_1597;99_5503&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AY999774
- Sequence Identity:
- Total samples: 139
- soil counts: 108
- aquatic counts: 13
- animal counts: 11
- plant counts: 7
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
9293 | 1 | Risk group (German classification) |
18525 | 1 | German classification |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces aureoverticillatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4347 | D44066 | 121 | ena | 66871 |
20218 | Streptomyces aureoverticillatus gene for 16S rRNA, partial sequence, strain: NBRC 12742 | AB249919 | 1453 | ena | 66871 |
9293 | Streptomyces aureoverticillatus strain NRRL B-3326 16S ribosomal RNA gene, partial sequence | AY999774 | 1496 | ena | 66871 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces aureoverticillatus JCM 4347 | GCA_014649395 | contig | ncbi | 66871 |
66792 | Streptomyces aureoverticillatus strain JCM 4347 | 66871.6 | wgs | patric | 66871 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
gram-positive | yes | 91.101 | no |
anaerobic | no | 99.3 | no |
halophile | no | 91.944 | no |
spore-forming | yes | 95.599 | no |
glucose-util | yes | 88.919 | no |
thermophile | no | 98.344 | yes |
flagellated | no | 97.994 | no |
motile | no | 92.97 | no |
aerobic | yes | 91.615 | no |
glucose-ferment | no | 89.012 | no |
External links
@ref: 9293
culture collection no.: DSM 40080, ATCC 15854, CBS 465.68, IFO 12742, ISP 5080, NBRC 12742, RIA 1007, RIA 679, JCM 4347, ATCC 19726, BCRC 12185, CGMCC 4.1666, INMI 1007, NRRL B-3326, VKM Ac-48
straininfo link
- @ref: 84142
- straininfo: 36529
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 24002610 | Streptomyces polyrhachii sp. nov., a novel actinomycete isolated from an edible Chinese black ant (Polyrhachis vicina Roger). | Yu C, Liu C, Wang X, Zhao J, Yang L, Gao R, Zhang Y, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-013-0021-3 | 2013 | Animals, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Hymenoptera/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/*isolation & purification/metabolism | Genetics |
Phylogeny | 31533290 | Characterization of Streptomyces sporangiiformans sp. nov., a Novel Soil Actinomycete with Antibacterial Activity against Ralstonia solanacearum. | Zhao J, Han L, Yu M, Cao P, Li D, Guo X, Liu Y, Wang X, Xiang W | Microorganisms | 10.3390/microorganisms7090360 | 2019 | ||
Phylogeny | 33774760 | Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.). | Peng C, Zhuang X, Gao C, Wang Z, Zhao J, Huang SX, Liu C, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-021-01561-3 | 2021 | *Actinobacteria, Antifungal Agents, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Streptomyces/genetics, *Typhaceae, Vitamin K 2 | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9293 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40080) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40080 | |||
18525 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM40080.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
84142 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID36529.1 | StrainInfo: A central database for resolving microbial strain identifiers |