Strain identifier

BacDive ID: 15036

Type strain: Yes

Species: Streptomyces aureoverticillatus

Strain Designation: INMI-1077

Strain history: KCC S-0347 <-- IFO 12742 <-- SAJ <-- ISP 5080 <-- RIA 679 <-- INMI 1007.

NCBI tax ID(s): 66871 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 9293

BacDive-ID: 15036

DSM-Number: 40080

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces aureoverticillatus INMI-1077 is a spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 66871
  • Matching level: species

strain history

@refhistory
9293<- E.B. Shirling, ISP <- V.D. Kuznetsov, RIA <- INMI
67770KCC S-0347 <-- IFO 12742 <-- SAJ <-- ISP 5080 <-- RIA 679 <-- INMI 1007.

doi: 10.13145/bacdive15036.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces aureoverticillatus
  • full scientific name: Streptomyces aureoverticillatus (Krassilnikov and Yuan 1960) Pridham 1970 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Actinomyces aureoverticillatus

@ref: 9293

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces aureoverticillatus

full scientific name: Streptomyces aureoverticillatus (Krassilnikov and Yuan 1960) Pridham 1970

strain designation: INMI-1077

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.05
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9293GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9293ISP2 MEDIUM (DSMZ Medium 987)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium987.pdf
9293ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
18525positiveoptimum30mesophilic
9293positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

  • @ref: 9293
  • compound: aminoacylase

halophily

  • @ref: 18525
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1852517234glucose+
1852522599arabinose+
1852517992sucrose-
1852518222xylose-
1852517268myo-inositol+/-
1852529864mannitol+
1852528757fructose+
1852526546rhamnose-
1852516634raffinose-
1852562968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18525+-----+--++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.country
9293soil
67770SoilRussiaRUS

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_5503.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_287;98_1597;99_5503&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AY999774
  • Sequence Identity:
  • Total samples: 139
  • soil counts: 108
  • aquatic counts: 13
  • animal counts: 11
  • plant counts: 7

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
92931Risk group (German classification)
185251German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces aureoverticillatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4347D44066121ena66871
20218Streptomyces aureoverticillatus gene for 16S rRNA, partial sequence, strain: NBRC 12742AB2499191453ena66871
9293Streptomyces aureoverticillatus strain NRRL B-3326 16S ribosomal RNA gene, partial sequenceAY9997741496ena66871

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces aureoverticillatus JCM 4347GCA_014649395contigncbi66871
66792Streptomyces aureoverticillatus strain JCM 434766871.6wgspatric66871

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes91.101no
anaerobicno99.3no
halophileno91.944no
spore-formingyes95.599no
glucose-utilyes88.919no
thermophileno98.344yes
flagellatedno97.994no
motileno92.97no
aerobicyes91.615no
glucose-fermentno89.012no

External links

@ref: 9293

culture collection no.: DSM 40080, ATCC 15854, CBS 465.68, IFO 12742, ISP 5080, NBRC 12742, RIA 1007, RIA 679, JCM 4347, ATCC 19726, BCRC 12185, CGMCC 4.1666, INMI 1007, NRRL B-3326, VKM Ac-48

straininfo link

  • @ref: 84142
  • straininfo: 36529

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24002610Streptomyces polyrhachii sp. nov., a novel actinomycete isolated from an edible Chinese black ant (Polyrhachis vicina Roger).Yu C, Liu C, Wang X, Zhao J, Yang L, Gao R, Zhang Y, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-013-0021-32013Animals, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Hymenoptera/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/*isolation & purification/metabolismGenetics
Phylogeny31533290Characterization of Streptomyces sporangiiformans sp. nov., a Novel Soil Actinomycete with Antibacterial Activity against Ralstonia solanacearum.Zhao J, Han L, Yu M, Cao P, Li D, Guo X, Liu Y, Wang X, Xiang WMicroorganisms10.3390/microorganisms70903602019
Phylogeny33774760Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.).Peng C, Zhuang X, Gao C, Wang Z, Zhao J, Huang SX, Liu C, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-021-01561-32021*Actinobacteria, Antifungal Agents, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Streptomyces/genetics, *Typhaceae, Vitamin K 2Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9293Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40080)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40080
18525Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40080.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84142Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36529.1StrainInfo: A central database for resolving microbial strain identifiers