Strain identifier

BacDive ID: 150320

Type strain: No

Species: Nicoletella semolina

NCBI tax ID(s): 271160 (species)

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General

@ref: 54863

BacDive-ID: 150320

keywords: Bacteria

description: Nicoletella semolina CCUG 39639 is a bacterium that was isolated from Equine trachea.

NCBI tax id

  • NCBI tax id: 271160
  • Matching level: species

doi: 10.13145/bacdive150320.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Nicoletella
  • species: Nicoletella semolina
  • full scientific name: Nicoletella semolina Kuhnert et al. 2005

@ref: 54863

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Nicoletella

species: Nicoletella semolina

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837717992sucrose+builds acid from
6837718257ornithine-degradation
6837716199urea+hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase+3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease+3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    54863C12:02.912
    54863C14:016.914
    54863C16:03416
    54863C18:02.718
    54863C13:0 ISO 2OH1.313.814
    54863C16:1 ω7c26.615.819
    54863C18:1 ω7c /12t/9t3.817.824
    54863C18:1 ω9c3.817.769
    54863C18:2 ω6,9c/C18:0 ANTE6.617.724
    54863C20:4 ω6,9,12,15c0.319.395
    54863Unidentified0.613.938
    54863Unidentified0.215.164
    54863unknown 14.5030.414.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
54863-+---++---++--------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
54863-++++-+--+---

Isolation, sampling and environmental information

isolation

  • @ref: 54863
  • sample type: Equine trachea
  • sampling date: 1998-07-01
  • geographic location: Uppsala
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Equidae (Horse)
#Host Body-Site#Oral cavity and airways#Trachea

External links

@ref: 54863

culture collection no.: CCUG 39639

straininfo link

  • @ref: 104598
  • straininfo: 108808

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
54863Curators of the CCUGhttps://www.ccug.se/strain?id=39639Culture Collection University of Gothenburg (CCUG) (CCUG 39639)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68377Automatically annotated from API NH
68382Automatically annotated from API zym
104598Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID108808.1