Strain identifier

BacDive ID: 150253

Type strain: No

Species: Sphingomonas sp.

NCBI tax ID(s): 28214 (species)

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General

@ref: 54778

BacDive-ID: 150253

keywords: Bacteria

description: Sphingomonas sp. CCUG 39394 is a bacterium that was isolated from Contaminant.

NCBI tax id

  • NCBI tax id: 28214
  • Matching level: species

doi: 10.13145/bacdive150253.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Sphingomonadaceae
  • genus: Sphingomonas
  • species: Sphingomonas sp.
  • full scientific name: Sphingomonas Yabuuchi et al. 1990

@ref: 54778

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas sp.

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    54778C15:01.315
    54778C16:02.716
    54778C17:02.417
    54778C14:0 2OH315.205
    54778C15:0 2OH5.516.217
    54778C16:1 ω11c0.615.757
    54778C16:1 ω5c215.908
    54778C16:1 ω7c0.515.819
    54778C17:0 iso3.516.629
    54778C17:1 ω6c37.716.862
    54778C17:1 ω8c5.316.792
    54778C18:0 ISO7.917.632
    54778C18:1 ω5c1.717.919
    54778C18:1 ω7c /12t/9t23.917.824
    54778C18:2 ω6,9c/C18:0 ANTE0.817.724
    54778Unidentified0.818.082
    54778Unidentified0.718.799
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
54778-----+--+-+----+----+

Isolation, sampling and environmental information

isolation

  • @ref: 54778
  • sample type: Contaminant
  • sampling date: 1998-04-01
  • country: Austria
  • origin.country: AUT
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Engineered#Laboratory#Contaminant

External links

@ref: 54778

culture collection no.: CCUG 39394

straininfo link

  • @ref: 104535
  • straininfo: 108774

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
54778Curators of the CCUGhttps://www.ccug.se/strain?id=39394Culture Collection University of Gothenburg (CCUG) (CCUG 39394)
68369Automatically annotated from API 20NE
104535Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID108774.1