Strain identifier
BacDive ID: 150237
Type strain:
Species: Shewanella algae
Strain history: IAM 13614 <-- NCTC 10738 <-- K. Komagata <-- Chiba Univ., Japan.
NCBI tax ID(s): 38313 (species)
version 8.1 (current version)
General
@ref: 54760
BacDive-ID: 150237
keywords: genome sequence, Bacteria, mesophilic, motile
description: Shewanella algae CCUG 39355 is a mesophilic, motile bacterium that was isolated from Feces.
NCBI tax id
- NCBI tax id: 38313
- Matching level: species
strain history
- @ref: 67770
- history: IAM 13614 <-- NCTC 10738 <-- K. Komagata <-- Chiba Univ., Japan.
doi: 10.13145/bacdive150237.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella algae
- full scientific name: Shewanella algae corrig. Simidu et al. 1990
synonyms
@ref synonym 20215 Shewanella haliotis 20215 Shewanella alga 20215 Shewanella upenei
@ref: 54760
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella algae
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 98.107 | |
69480 | 99.981 | negative |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 98.859 |
69481 | no | 100 |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
54760 | Feces |
67770 | Feces |
isolation source categories
- Cat1: #Host Body Product
- Cat2: #Gastrointestinal tract
- Cat3: #Feces (Stool)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Shewanella algae NCTC10738 | GCA_900457125 | contig | ncbi | 38313 |
66792 | Shewanella putrefaciens strain NCTC10738 | 24.15 | wgs | patric | 24 |
66792 | Shewanella putrefaciens NCTC 10738 | 2859001387 | draft | img | 24 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 94.746 | no |
gram-positive | no | 99.131 | no |
anaerobic | no | 94.04 | no |
aerobic | yes | 53.772 | no |
halophile | no | 61.721 | no |
spore-forming | no | 96.117 | no |
glucose-util | yes | 91.83 | no |
flagellated | yes | 92.239 | no |
thermophile | no | 99.413 | no |
glucose-ferment | no | 62.906 | no |
External links
@ref: 54760
culture collection no.: CCUG 39355, NCTC 10738, LMG 2265, JCM 20959, IAM 13614
straininfo link
- @ref: 104519
- straininfo: 4966
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
54760 | Curators of the CCUG | https://www.ccug.se/strain?id=39355 | Culture Collection University of Gothenburg (CCUG) (CCUG 39355) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
104519 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID4966.1 |