Strain identifier

BacDive ID: 150237

Type strain: No

Species: Shewanella algae

Strain history: IAM 13614 <-- NCTC 10738 <-- K. Komagata <-- Chiba Univ., Japan.

NCBI tax ID(s): 38313 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 54760

BacDive-ID: 150237

keywords: genome sequence, Bacteria, mesophilic, motile

description: Shewanella algae CCUG 39355 is a mesophilic, motile bacterium that was isolated from Feces.

NCBI tax id

  • NCBI tax id: 38313
  • Matching level: species

strain history

  • @ref: 67770
  • history: IAM 13614 <-- NCTC 10738 <-- K. Komagata <-- Chiba Univ., Japan.

doi: 10.13145/bacdive150237.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Shewanellaceae
  • genus: Shewanella
  • species: Shewanella algae
  • full scientific name: Shewanella algae corrig. Simidu et al. 1990
  • synonyms

    @refsynonym
    20215Shewanella haliotis
    20215Shewanella alga
    20215Shewanella upenei

@ref: 54760

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella algae

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes98.107
6948099.981negative

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no98.859
69481no100

Isolation, sampling and environmental information

isolation

@refsample type
54760Feces
67770Feces

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Gastrointestinal tract
  • Cat3: #Feces (Stool)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Shewanella algae NCTC10738GCA_900457125contigncbi38313
66792Shewanella putrefaciens strain NCTC1073824.15wgspatric24
66792Shewanella putrefaciens NCTC 107382859001387draftimg24

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes94.746no
gram-positiveno99.131no
anaerobicno94.04no
aerobicyes53.772no
halophileno61.721no
spore-formingno96.117no
glucose-utilyes91.83no
flagellatedyes92.239no
thermophileno99.413no
glucose-fermentno62.906no

External links

@ref: 54760

culture collection no.: CCUG 39355, NCTC 10738, LMG 2265, JCM 20959, IAM 13614

straininfo link

  • @ref: 104519
  • straininfo: 4966

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
54760Curators of the CCUGhttps://www.ccug.se/strain?id=39355Culture Collection University of Gothenburg (CCUG) (CCUG 39355)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
104519Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID4966.1