Strain identifier
version 8.1 (current version)
General
@ref: 54731
BacDive-ID: 150213
keywords: Bacteria, microaerophile, mesophilic
description: Campylobacter pylori CCUG 39297 is a microaerophile, mesophilic bacterium that was isolated from Human intestine biopsy .
NCBI tax id
- NCBI tax id: 210
- Matching level: species
doi: 10.13145/bacdive150213.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter pylori
- full scientific name: Campylobacter pylori corrig. Marshall et al. 1985
synonyms
@ref synonym 20215 Campylobacter pyloridis 20215 Helicobacter pylori 20215 Helicobacter nemestrinae
@ref: 54731
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Helicobacteraceae
genus: Helicobacter
species: Helicobacter pylori
type strain: no
Morphology
colony morphology
- @ref: 54731
- incubation period: >3 days
Culture and growth conditions
culture temp
- @ref: 54731
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 54731
- oxygen tolerance: microaerophile
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68373 | 16199 | urea | + | hydrolysis |
| 68373 | 17632 | nitrate | - | reduction |
| 68373 | 606565 | hippurate | - | hydrolysis |
| 68373 | 78019 | triphenyltetrazolium chloride | - | reduction |
| 68373 | 17634 | D-glucose | - | assimilation |
| 68373 | 30031 | succinate | - | assimilation |
| 68373 | 30089 | acetate | - | assimilation |
| 68373 | 17272 | propionate | - | assimilation |
| 68373 | 25115 | malate | - | assimilation |
| 68373 | 16947 | citrate | - | assimilation |
antibiotic resistance
| @ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. |
|---|---|---|---|---|---|
| 68373 | 48923 | erythromycin | yes | yes | 14 µg |
| 68373 | 474053 | cefazolin | yes | yes | 224 µg |
| 68373 | 100147 | nalidixic acid | yes | yes | 84 µg |
metabolite production
- @ref: 68373
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: no
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68373 | catalase | + | 1.11.1.6 |
| 68373 | alkaline phosphatase | + | 3.1.3.1 |
| 68373 | L-aspartate arylamidase | - | 3.4.11.21 |
| 68373 | L-arginine arylamidase | - | |
| 68373 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68373 | gamma-glutamyltransferase | + | 2.3.2.2 |
| 68373 | esterase | + | |
| 68373 | urease | + | 3.5.1.5 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 54731 C12:0 0.5 12 54731 C14:0 48.6 14 54731 C15:0 0.4 15 54731 C16:0 2.7 16 54731 C18:0 5.5 18 54731 C13:0 ISO 2OH 0.2 13.814 54731 C13:1 at 12-13 2 12.931 54731 C16:0 3OH 1.1 17.52 54731 C16:1 ω7c 0.3 15.819 54731 C17:0 3OH 0.2 18.535 54731 C18:0 3OH 1 19.551 54731 C18:1 ω7c /12t/9t 10.9 17.824 54731 C18:1 ω9c 0.7 17.769 54731 C18:2 ω6,9c/C18:0 ANTE 1.2 17.724 54731 C19:0 CYCLO ω8c 21.6 18.9 54731 unknown 14.966 3.3 14.966 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API CAM
| @ref | URE | NIT | EST | HIP | GGT | TTC | PYRA | ArgA | AspA | PAL | H2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | ERO | CAT |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54731 | + | - | + | - | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 54731
- sample type: Human intestine biopsy (colon flexur)
- sampling date: 1998-04-01
- geographic location: Örebro
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Gastrointestinal tract | |
| #Infection | #Medical environment | #Medical practice |
| #Infection | #Patient |
External links
@ref: 54731
culture collection no.: CCUG 39297
straininfo link
- @ref: 104503
- straininfo: 54677
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 54731 | Curators of the CCUG | https://www.ccug.se/strain?id=39297 | Culture Collection University of Gothenburg (CCUG) (CCUG 39297) | |
| 68373 | Automatically annotated from API CAM | |||
| 104503 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID54677.1 |