Strain identifier

BacDive ID: 150183

Type strain: No

Species: Clostridium perfringens

NCBI tax ID(s): 1502 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 8.1 (current version)

General

@ref: 54700

BacDive-ID: 150183

keywords: Bacteria, anaerobe, mesophilic

description: Clostridium perfringens CCUG 39212 is an anaerobe, mesophilic bacterium that was isolated from Human blood,89-yr-old man.

NCBI tax id

  • NCBI tax id: 1502
  • Matching level: species

doi: 10.13145/bacdive150183.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium perfringens
  • full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus perfringens

@ref: 54700

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Clostridiaceae

genus: Clostridium

species: Clostridium perfringens

type strain: no

Morphology

colony morphology

  • @ref: 54700
  • incubation period: 1 day

Culture and growth conditions

culture temp

  • @ref: 54700
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 54700
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose-fermentation
6838029985L-glutamate+degradation
6838017632nitrate+reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase+3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase+3.2.1.51
68380glutamate decarboxylase+4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase+3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    54700C10:00.710
    54700C12:018.412
    54700C13:00.713
    54700C14:011.714
    54700C16:05.516
    54700C18:08.218
    54700C19:01.819
    54700C20:0920
    54700C13:0 3OH/C15:1 i I/H2.914.469
    54700C13:0 ISO 2OH1.313.814
    54700C13:1 at 12-130.812.931
    54700C16:0 aldehyde1.114.949
    54700C16:1 ω9c115.774
    54700C17:1 ω5c ISO6.816.461
    54700C18:1 ω9c2.417.769
    54700C18:2 ω6,9c/C18:0 ANTE3.817.724
    54700C19:0 CYCLO ω8c1.718.9
    54700C19:0 CYCLO ω9c1.718.87
    54700C19:1 ISO I8.518.473
    54700C20:1 ω7c4.119.833
    54700C20:1 ω9c3.919.77
    54700C20:2 ω6,9c2.519.735
    54700unknown 16.9721.716.972
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
54700-+++-++-+++-+++-+-----+------

Isolation, sampling and environmental information

isolation

  • @ref: 54700
  • sample type: Human blood,89-yr-old man
  • sampling date: 1998-01-29
  • geographic location: Linköping
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Fluids#Blood
#Infection#Patient

External links

@ref: 54700

culture collection no.: CCUG 39212

straininfo link

  • @ref: 104477
  • straininfo: 108751

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
54700Curators of the CCUGhttps://www.ccug.se/strain?id=39212Culture Collection University of Gothenburg (CCUG) (CCUG 39212)
68380Automatically annotated from API rID32A
104477Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID108751.1