Strain identifier
version 8.1 (current version)
General
@ref: 54700
BacDive-ID: 150183
keywords: Bacteria, anaerobe, mesophilic
description: Clostridium perfringens CCUG 39212 is an anaerobe, mesophilic bacterium that was isolated from Human blood,89-yr-old man.
NCBI tax id
- NCBI tax id: 1502
- Matching level: species
doi: 10.13145/bacdive150183.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium perfringens
- full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus perfringens
@ref: 54700
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Clostridium
species: Clostridium perfringens
type strain: no
Morphology
colony morphology
- @ref: 54700
- incubation period: 1 day
Culture and growth conditions
culture temp
- @ref: 54700
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 54700
- oxygen tolerance: anaerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68380 | 16199 | urea | - | hydrolysis |
68380 | 29016 | arginine | + | hydrolysis |
68380 | 16024 | D-mannose | + | fermentation |
68380 | 16634 | raffinose | - | fermentation |
68380 | 29985 | L-glutamate | + | degradation |
68380 | 17632 | nitrate | + | reduction |
68380 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68380 | serine arylamidase | - | |
68380 | glutamyl-glutamate arylamidase | - | |
68380 | histidine arylamidase | - | |
68380 | glycin arylamidase | - | |
68380 | alanine arylamidase | - | 3.4.11.2 |
68380 | tyrosine arylamidase | - | |
68380 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68380 | leucine arylamidase | - | 3.4.11.1 |
68380 | phenylalanine arylamidase | - | |
68380 | leucyl glycin arylamidase | - | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | L-arginine arylamidase | - | |
68380 | alkaline phosphatase | + | 3.1.3.1 |
68380 | tryptophan deaminase | - | 4.1.99.1 |
68380 | alpha-fucosidase | + | 3.2.1.51 |
68380 | glutamate decarboxylase | + | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68380 | beta-glucuronidase | + | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | + | 3.2.1.21 |
68380 | alpha-glucosidase | + | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | + | 3.2.1.23 |
68380 | alpha-galactosidase | + | 3.2.1.22 |
68380 | arginine dihydrolase | + | 3.5.3.6 |
68380 | urease | - | 3.5.1.5 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 54700 C10:0 0.7 10 54700 C12:0 18.4 12 54700 C13:0 0.7 13 54700 C14:0 11.7 14 54700 C16:0 5.5 16 54700 C18:0 8.2 18 54700 C19:0 1.8 19 54700 C20:0 9 20 54700 C13:0 3OH/C15:1 i I/H 2.9 14.469 54700 C13:0 ISO 2OH 1.3 13.814 54700 C13:1 at 12-13 0.8 12.931 54700 C16:0 aldehyde 1.1 14.949 54700 C16:1 ω9c 1 15.774 54700 C17:1 ω5c ISO 6.8 16.461 54700 C18:1 ω9c 2.4 17.769 54700 C18:2 ω6,9c/C18:0 ANTE 3.8 17.724 54700 C19:0 CYCLO ω8c 1.7 18.9 54700 C19:0 CYCLO ω9c 1.7 18.87 54700 C19:1 ISO I 8.5 18.473 54700 C20:1 ω7c 4.1 19.833 54700 C20:1 ω9c 3.9 19.77 54700 C20:2 ω6,9c 2.5 19.735 54700 unknown 16.972 1.7 16.972 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
54700 | - | + | + | + | - | + | + | - | + | + | + | - | + | + | + | - | + | - | - | - | - | - | + | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 54700
- sample type: Human blood,89-yr-old man
- sampling date: 1998-01-29
- geographic location: Linköping
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | #Male |
#Host Body Product | #Fluids | #Blood |
#Infection | #Patient |
External links
@ref: 54700
culture collection no.: CCUG 39212
straininfo link
- @ref: 104477
- straininfo: 108751
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
54700 | Curators of the CCUG | https://www.ccug.se/strain?id=39212 | Culture Collection University of Gothenburg (CCUG) (CCUG 39212) | |
68380 | Automatically annotated from API rID32A | |||
104477 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID108751.1 |