Strain identifier

BacDive ID: 150099

Type strain: No

Species: Corynebacterium genitalium

NCBI tax ID(s): 585529 (strain), 38288 (species)

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General

@ref: 54602

BacDive-ID: 150099

keywords: genome sequence, 16S sequence, Bacteria, microaerophile

description: Corynebacterium genitalium CCUG 38989 B is a microaerophile bacterium that was isolated from Human clinical isolate.

NCBI tax id

NCBI tax idMatching level
38288species
585529strain

doi: 10.13145/bacdive150099.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium genitalium
  • full scientific name: Corynebacterium genitalium (ex Furness and Evangelista 1976) Jaén-Luchoro et al. 2023

  • synonyms

    • @ref: 20215
    • synonym: Corynebacterium genitalium

@ref: 54602

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium genitalium

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • motility: no
  • confidence: 94

Culture and growth conditions

culture temp

  • @ref: 54602
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 54602
  • oxygen tolerance: microaerophile

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
54602-+-+----------------+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
54602-+-+-+--------------

Isolation, sampling and environmental information

isolation

  • @ref: 54602
  • sample type: Human clinical isolate

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Infection#Patient
#Infection#Medical environment#Clinic
#Infection#Patient#Specimen

Sequence information

16S sequences

  • @ref: 124043
  • description: Corynebacterium genitalium 16S ribosomal RNA gene, complete sequence.
  • accession: U87817
  • length: 1419
  • database: nuccore
  • NCBI tax ID: 585529

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium genitalium ATCC 33030GCA_000143825chromosomencbi585529
66792Corynebacterium genitalium ATCC 33030585529.3wgspatric585529
66792Corynebacterium genitalium ATCC 33030648276633draftimg585529
66792Corynebacterium genitalium ATCC 33030 CCUG 38989GCA_024453835completencbi585529

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes86.08no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no94.703yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no52.771yes
69480spore-formingspore-formingAbility to form endo- or exosporesno78.175no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno94.083yes
69480flagellatedmotile2+Ability to perform flagellated movementno94no

External links

@ref: 54602

culture collection no.: CCUG 38989 B, ATCC 33030, NCTC 12451

straininfo link

  • @ref: 104407
  • straininfo: 8631

literature

  • topic: Phylogeny
  • Pubmed-ID: 36031177
  • title: Corynebacterium genitalium sp. nov., nom. rev. and Corynebacterium pseudogenitalium sp. nov., nom. rev., two old species of the genus Corynebacterium described from clinical and environmental samples.
  • authors: Jaen-Luchoro D, Al-Shaer S, Pineiro-Iglesias B, Gonzales-Siles L, Cardew S, Jensie-Markopolous S, Ohlen M, Inganas E, Neumann-Schaal M, Wolf J, Moore ERB
  • journal: Res Microbiol
  • DOI: 10.1016/j.resmic.2022.103987
  • year: 2022

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
54602Curators of the CCUGhttps://www.ccug.se/strain?id=38989Culture Collection University of Gothenburg (CCUG) (CCUG 38989 B)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
104407Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID8631.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy