Strain identifier
BacDive ID: 15008
Type strain: 
Species: Streptomyces aurantiacus
Strain history: KCC S-0453 <-- IFO 13017 <-- SAJ <-- ISP 5412 <-- INMI 1373.
NCBI tax ID(s): 47760 (species)
version 8.1 (current version)
General
@ref: 9524
BacDive-ID: 15008
DSM-Number: 40412
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Streptomyces aurantiacus DSM 40412 is a spore-forming, mesophilic, Gram-positive bacterium of the family Streptomycetaceae.
NCBI tax id
- NCBI tax id: 47760
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9524 | <- E.B. Shirling, ISP <- N.A. Krassilnikov, INMI |
| 67770 | KCC S-0453 <-- IFO 13017 <-- SAJ <-- ISP 5412 <-- INMI 1373. |
doi: 10.13145/bacdive15008.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces aurantiacus
- full scientific name: Streptomyces aurantiacus (Rossi Doria 1891) Waksman 1953 (Approved Lists 1980)
synonyms
@ref synonym 20215 Actinomyces albosporeus 20215 Actinomyces glomeroaurantiacus 20215 Streptomyces glomeroaurantiacus 20215 Streptotrix aurantiaca 20215 Streptomyces albosporeus
@ref: 9524
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces aurantiacus
full scientific name: Streptomyces aurantiacus (Rossi Doria 1891) Waksman 1953 emend. Lanoot et al. 2002
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 9524
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 18589 | positive | optimum | 28 | mesophilic |
| 9524 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68368 | 5291 | gelatin | + | hydrolysis |
| 68368 | 27897 | tryptophan | - | energy source |
| 68368 | 16199 | urea | + | hydrolysis |
| 68368 | 16947 | citrate | - | assimilation |
| 68368 | 18257 | ornithine | - | degradation |
| 68368 | 25094 | lysine | - | degradation |
| 68368 | 29016 | arginine | - | hydrolysis |
metabolite production
| @ref | Chebi-ID | metabolite | production |
|---|---|---|---|
| 68368 | 15688 | acetoin | yes |
| 68368 | 35581 | indole | no |
| 68368 | 16136 | hydrogen sulfide | no |
metabolite tests
| @ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
|---|---|---|---|---|
| 68368 | 15688 | acetoin | + | |
| 68368 | 35581 | indole | - |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68368 | gelatinase | + | |
| 68368 | tryptophan deaminase | - | 4.1.99.1 |
| 68368 | urease | + | 3.5.1.5 |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 |
| 68368 | lysine decarboxylase | - | 4.1.1.18 |
| 68368 | arginine dihydrolase | - | 3.5.3.6 |
| 68368 | beta-galactosidase | - | 3.2.1.23 |
API 20E
| @ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 18589 | - | - | - | - | - | - | + | - | - | + | + |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_4250.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_135;98_3202;99_4250&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AJ781383
- Sequence Identity:
- Total samples: 151
- soil counts: 37
- aquatic counts: 4
- animal counts: 4
- plant counts: 106
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 9524 | 1 | Risk group (German classification) |
| 18589 | 1 | German classification |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces aurantiacus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4453 | D44150 | 120 | ena | 47760 |
| 20218 | Streptomyces aurantiacus 16S rRNA gene, type strain LMG 19358 | AJ781383 | 1482 | ena | 47760 |
| 20218 | Streptomyces aurantiacus gene for 16S rRNA, partial sequence, strain: NBRC 13017 | AB184259 | 1473 | ena | 47760 |
Genome sequences
- @ref: 67770
- description: Streptomyces aurantiacus NRRL ISP-5412
- accession: GCA_001418335
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 47760
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| flagellated | no | 97.458 | no |
| gram-positive | yes | 89.429 | no |
| anaerobic | no | 99.377 | no |
| aerobic | yes | 95.017 | no |
| halophile | no | 91.992 | no |
| spore-forming | yes | 95.116 | no |
| glucose-util | yes | 88.172 | no |
| thermophile | no | 98.115 | yes |
| motile | no | 93.186 | no |
| glucose-ferment | no | 89.194 | no |
External links
@ref: 9524
culture collection no.: DSM 40412, ATCC 19822, ATCC 25429, CBS 927.69, IFO 13017, INMI 1373, ISP 5412, NBRC 13017, RIA 1209, JCM 4453, BCRC 16233, CGMCC 4.1429, LMG 19358, NRRL ISP-5412, VKM Ac-44
straininfo link
- @ref: 84116
- straininfo: 13361
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 12054245 | The search for synonyms among streptomycetes by using SDS-PAGE of whole-cell proteins. Emendation of the species Streptomyces aurantiacus, Streptomyces cacaoi subsp. cacaoi, Streptomyces caeruleus and Streptomyces violaceus. | Lanoot B, Vancanneyt M, Cleenwerck I, Wang L, Li W, Liu Z, Swings J | Int J Syst Evol Microbiol | 10.1099/00207713-52-3-823 | 2002 | Bacterial Proteins/*analysis, Bacterial Typing Techniques, Electrophoresis, Polyacrylamide Gel, Nucleic Acid Hybridization, Phenotype, Species Specificity, Streptomyces/*chemistry/*classification/genetics | Enzymology |
| Phylogeny | 28382471 | Two new species of the genus Streptomyces: Streptomyces camponoti sp. nov. and Streptomyces cuticulae sp. nov. isolated from the cuticle of Camponotus japonicus Mayr. | Piao C, Zheng W, Li Y, Liu C, Jin L, Song W, Yan K, Wang X, Xiang W | Arch Microbiol | 10.1007/s00203-017-1353-6 | 2017 | Animals, Ants/*microbiology, Bacterial Typing Techniques, China, DNA Gyrase/genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Streptomyces/classification/genetics/isolation & purification | Transcriptome |
| Phylogeny | 35471105 | Streptomyces liliifuscus sp. nov and an anti-ginger plague agent Streptomyces liliiviolaceus sp. nov, two novel species isolated from soil of Lilium lancifolium. | Li K, Man Y, Liu J, Liu Z, Ma H, Zhu H, Zhou Y, Zhang C, Zhou X | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005340 | 2022 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Ginger/genetics, *Lilium/genetics, Phylogeny, *Plague, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil Microbiology, *Streptomyces | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9524 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40412) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40412 | |||
| 18589 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM40412.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 68368 | Automatically annotated from API 20E | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 84116 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13361.1 | StrainInfo: A central database for resolving microbial strain identifiers |