Strain identifier
BacDive ID: 150
Type strain: 
Species: Actinomyces israelii
Strain history: <- K. Schaal; <- ATCC; ATCC 10048 <- C. W. Emmons; NHI 1829 (Actinomyces bovis)
NCBI tax ID(s): 1659 (species)
version 9.1 (current version)
General
@ref: 10672
BacDive-ID: 150
DSM-Number: 43011
keywords: genome sequence, 16S sequence, Bacteria, anaerobe
description: Actinomyces israelii CCUG 34702 is an anaerobe bacterium that was isolated from pleural fluid.
NCBI tax id
- NCBI tax id: 1659
- Matching level: species
strain history
- @ref: 10672
- history: <- K. Schaal; <- ATCC; ATCC 10048 <- C. W. Emmons; NHI 1829 (Actinomyces bovis)
doi: 10.13145/bacdive150.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Actinomycetales
- family: Actinomycetaceae
- genus: Actinomyces
- species: Actinomyces israelii
- full scientific name: Actinomyces israelii (Kruse 1896) Lachner-Sandoval 1898 (Approved Lists 1980)
synonyms
@ref synonym 20215 Streptothrix israeli 20215 Actinobacterium israeli
@ref: 10672
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Actinomycetaceae
genus: Actinomyces
species: Actinomyces israelii
full scientific name: Actinomyces israelii (Kruse 1896) Lachner-Sandoval 1898 emend. Nouioui et al. 2018
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 93.156 | |
| 69480 | 94.5 | no |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10672 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
| 10672 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | yes | https://mediadive.dsmz.de/medium/104 | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 52262 | positive | growth | 37 |
| 10672 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 10672 | anaerobe |
| 52262 | anaerobe |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 52262 C14:0 2.2 14 52262 C16:0 42.4 16 52262 C18:0 8.3 18 52262 C16:1 ω9c 0.9 15.774 52262 C17:1 ω9c 1.4 16.773 52262 C18:1 ω9c 26.8 17.769 52262 C18:1 ω9c DMA 5.5 18.226 52262 C18:2 ω6,9c/C18:0 ANTE 10.1 17.724 52262 C19:0 CYCLO ω9c 1.5 18.87 52262 Unidentified 0.9 18.18 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 10672 | pleural fluid |
| 52262 | Human pleural fluid |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Oral cavity and Airways | #Pleural fluid |
| #Infection | #Patient |
Safety information
risk assessment
- @ref: 10672
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Actinomyces israelii strain ATCC 10048 16S ribosomal RNA gene, partial sequence
- accession: AF058046
- length: 265
- database: nuccore
- NCBI tax ID: 1659
Genome sequences
- @ref: 66792
- description: Actinomyces israelii ATCC 10048
- accession: GCA_026891875
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1659
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 93.156 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 70.554 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 67.497 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 77.489 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 92.7 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 94.5 | no |
External links
@ref: 10672
culture collection no.: CCUG 34702, DSM 43011, ATCC 10048, NHI 1829
straininfo link
- @ref: 69832
- straininfo: 35174
literature
| topic | Pubmed-ID | title | authors | journal | year | mesh | DOI |
|---|---|---|---|---|---|---|---|
| Pathogenicity | 7492899 | Antibacterial action of dental cements: an in vitro study. | Morrier JJ, Rocca JP, Barsotti O | Bull Group Int Rech Sci Stomatol Odontol | 1995 | Actinomyces/*drug effects/growth & development, Analysis of Variance, Anti-Bacterial Agents/*pharmacology, Dental Cements/*pharmacology, Humans, Microbial Sensitivity Tests, Saliva/microbiology, Streptococcus mutans/*drug effects/growth & development, Streptococcus sanguis/*drug effects/growth & development | |
| 9863424 | Experimental actinomycosis in mice induced by alginate gel particles containing Actinomyces israelii. | Sumita M, Hoshino E, Iwaku M | Endod Dent Traumatol | 1998 | *Actinomyces/cytology/immunology, *Actinomycosis/microbiology, *Alginates, Animals, Chronic Disease, Dental Research/methods, *Disease Models, Animal, Female, Gels, Male, Mice, Mice, Inbred BALB C/*microbiology, Peritoneal Cavity/microbiology | 10.1111/j.1600-9657.1998.tb00827.x |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10672 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43011) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43011 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 52262 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 34702) | https://www.ccug.se/strain?id=34702 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69832 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID35174.1 | StrainInfo: A central database for resolving microbial strain identifiers |