We are hiring!

Strain identifier

BacDive ID: 15

Type strain: Yes

Species: Acetobacter cibinongensis

Strain Designation: 4H-1

Strain history: NRIC 0482 <-- P. Lisdiyanti 4H-1.

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7.1 (current version):
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 7.1 (current version)

General

@ref: 5995

BacDive-ID: 15

DSM-Number: 15549

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Acetobacter cibinongensis 4H-1 is a mesophilic bacterium that was isolated from fruit of montain soursop, Annona montanae.

NCBI tax id

NCBI tax idMatching level
146475species
1307904strain

strain history

doi: 10.13145/bacdive15.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter cibinongensis
  • full scientific name: Acetobacter cibinongensis Lisdiyanti et al. 2002

@ref: 5995

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter cibinongensis

full scientific name: Acetobacter cibinongensis Lisdiyanti et al. 2002

strain designation: 4H-1

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.421

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5995ACETIC ACID BACTERIUM MEDIUM (DSMZ Medium 989)yeshttps://mediadive.dsmz.de/medium/989Name: ACETIC ACID BACTERIUM MEDIUM (DSMZ Medium 989) Composition: Agar 15.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Bacto peptone 5.0 g/l MgSO4 x 7 H2O 1.0 g/l Distilled water
40567MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
5995positivegrowth30mesophilic
40567positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 96.888

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 97.079

observation

  • @ref: 67770
  • observation: quinones: Q-9

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinent
5995fruit of montain soursop, Annona montanaeAnnona montanaeIndonesiaIDNAsia
67770Mountain soursop (Annona montanae)Annona montanaeIndonesiaIDNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Fruit (Seed)

taxonmaps

  • @ref: 69479
  • File name: preview.99_5944.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_827;98_961;99_5944&stattab=map
  • Last taxonomy: Acetobacter
  • 16S sequence: AB681085
  • Sequence Identity:
  • Total samples: 107
  • soil counts: 13
  • aquatic counts: 12
  • animal counts: 27
  • plant counts: 55

Safety information

risk assessment

  • @ref: 5995
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acetobacter cibinongensis gene for 16S rRNA, partial sequence, strain: NBRC 16605AB6810851417ena146475
5995Acetobacter cibinongensis gene for 16S ribosomal RNA, strain: 4H-1AB0527101414ena146475

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter cibinongensis 4H-11231339.3wgspatric1307904
66792Acetobacter cibinongensis strain NBRC 16605146475.5wgspatric146475
66792Acetobacter cibinongensis 4H-12901808964draftimg146475
67770Acetobacter cibinongensis 4H-1GCA_000963925contigncbi146475
67770Acetobacter cibinongensis NBRC 16605GCA_007989305contigncbi146475
66792Candidatus Endoriftia persephone Tica-EPR-9o50.NGCA_023733635completepatric393765

GC content

  • @ref: 67770
  • GC-content: 54.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 5995

culture collection no.: DSM 15549, IFO 16605, JCM 11196, NBRC 16605, NRIC 0482, CIP 107380

straininfo link

@refpassport
20218http://www.straininfo.net/strains/371154
20218http://www.straininfo.net/strains/290582
20218http://www.straininfo.net/strains/290583
20218http://www.straininfo.net/strains/336916
20218http://www.straininfo.net/strains/336917

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5995Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15549)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15549
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40567Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4809
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)