Archive BacDiveID:10.13145/bacdive15.20221219.7.1

Strain identifier

BacDive ID: 15

Type strain:

Species: Acetobacter cibinongensis

Strain Designation: 4H-1

Strain history: NRIC 0482 <-- P. Lisdiyanti 4H-1.

NCBI tax ID(s): 1307904 (strain), 146475 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 5995

BacDive-ID: 15

DSM-Number: 15549

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Acetobacter cibinongensis 4H-1 is a mesophilic bacterium that was isolated from fruit of montain soursop, Annona montanae.

NCBI tax id

NCBI tax id	Matching level
146475	species
1307904	strain

strain history

doi: 10.13145/bacdive15.20221219.7.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter cibinongensis
full scientific name: Acetobacter cibinongensis Lisdiyanti et al. 2002

@ref: 5995

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter cibinongensis

full scientific name: Acetobacter cibinongensis Lisdiyanti et al. 2002

strain designation: 4H-1

type strain: yes

Morphology

cell morphology

@ref: 69480
gram stain: negative
confidence: 99.421

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
5995	ACETIC ACID BACTERIUM MEDIUM (DSMZ Medium 989)	yes	https://mediadive.dsmz.de/medium/989	Name: ACETIC ACID BACTERIUM MEDIUM (DSMZ Medium 989) Composition: Agar 15.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Bacto peptone 5.0 g/l MgSO4 x 7 H2O 1.0 g/l Distilled water
40567	MEDIUM 72- for trypto casein soja agar	yes		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@ref	growth	type	temperature	range
5995	positive	growth	30	mesophilic
40567	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

spore formation

@ref: 69480
spore formation: no
confidence: 96.888

halophily

@ref: 69480
halophily level: non-halophilic
confidence: 97.079

observation

@ref: 67770
observation: quinones: Q-9

Isolation, sampling and environmental information

isolation

@ref	sample type	host species	country	origin.country	continent
5995	fruit of montain soursop, Annona montanae	Annona montanae	Indonesia	IDN	Asia
67770	Mountain soursop (Annona montanae)	Annona montanae	Indonesia	IDN	Asia

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Fruit (Seed)

taxonmaps

@ref: 69479
File name: preview.99_5944.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_827;98_961;99_5944&stattab=map
Last taxonomy: Acetobacter
16S sequence: AB681085
Sequence Identity:
Total samples: 107
soil counts: 13
aquatic counts: 12
animal counts: 27
plant counts: 55

Safety information

risk assessment

@ref: 5995
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Acetobacter cibinongensis gene for 16S rRNA, partial sequence, strain: NBRC 16605	AB681085	1417	ena	146475
5995	Acetobacter cibinongensis gene for 16S ribosomal RNA, strain: 4H-1	AB052710	1414	ena	146475

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Acetobacter cibinongensis 4H-1	1231339.3	wgs	patric	1307904
66792	Acetobacter cibinongensis strain NBRC 16605	146475.5	wgs	patric	146475
66792	Acetobacter cibinongensis 4H-1	2901808964	draft	img	146475
67770	Acetobacter cibinongensis 4H-1	GCA_000963925	contig	ncbi	146475
67770	Acetobacter cibinongensis NBRC 16605	GCA_007989305	contig	ncbi	146475
66792	Candidatus Endoriftia persephone Tica-EPR-9o50.N	GCA_023733635	complete	patric	393765

GC content

@ref: 67770
GC-content: 54.5
method: high performance liquid chromatography (HPLC)

External links

@ref: 5995

culture collection no.: DSM 15549, IFO 16605, JCM 11196, NBRC 16605, NRIC 0482, CIP 107380

straininfo link

@ref	passport
20218	http://www.straininfo.net/strains/371154
20218	http://www.straininfo.net/strains/290582
20218	http://www.straininfo.net/strains/290583
20218	http://www.straininfo.net/strains/336916
20218	http://www.straininfo.net/strains/336917

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
5995	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15549)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-15549
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
40567	Curators of the CIP		https://brclims.pasteur.fr/brcWeb/souche/detail/1/4809
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)