Strain identifier
BacDive ID: 15
Type strain:
Species: Acetobacter cibinongensis
Strain Designation: 4H-1
Strain history: NRIC 0482 <-- P. Lisdiyanti 4H-1.
NCBI tax ID(s): 1307904 (strain), 146475 (species)
General
@ref: 5995
BacDive-ID: 15
DSM-Number: 15549
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Acetobacter cibinongensis 4H-1 is a mesophilic bacterium that was isolated from fruit of montain soursop, Annona montanae.
NCBI tax id
NCBI tax id | Matching level |
---|---|
146475 | species |
1307904 | strain |
strain history
doi: 10.13145/bacdive15.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter cibinongensis
- full scientific name: Acetobacter cibinongensis Lisdiyanti et al. 2002
@ref: 5995
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter cibinongensis
full scientific name: Acetobacter cibinongensis Lisdiyanti et al. 2002
strain designation: 4H-1
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.421
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5995 | ACETIC ACID BACTERIUM MEDIUM (DSMZ Medium 989) | yes | https://mediadive.dsmz.de/medium/989 | Name: ACETIC ACID BACTERIUM MEDIUM (DSMZ Medium 989) Composition: Agar 15.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Bacto peptone 5.0 g/l MgSO4 x 7 H2O 1.0 g/l Distilled water |
40567 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5995 | positive | growth | 30 | mesophilic |
40567 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 96.888
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 97.079
observation
- @ref: 67770
- observation: quinones: Q-9
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | country | origin.country | continent |
---|---|---|---|---|---|
5995 | fruit of montain soursop, Annona montanae | Annona montanae | Indonesia | IDN | Asia |
67770 | Mountain soursop (Annona montanae) | Annona montanae | Indonesia | IDN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Tree |
#Host Body-Site | #Plant | #Fruit (Seed) |
taxonmaps
- @ref: 69479
- File name: preview.99_5944.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_827;98_961;99_5944&stattab=map
- Last taxonomy: Acetobacter
- 16S sequence: AB681085
- Sequence Identity:
- Total samples: 107
- soil counts: 13
- aquatic counts: 12
- animal counts: 27
- plant counts: 55
Safety information
risk assessment
- @ref: 5995
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Acetobacter cibinongensis gene for 16S rRNA, partial sequence, strain: NBRC 16605 | AB681085 | 1417 | ena | 146475 |
5995 | Acetobacter cibinongensis gene for 16S ribosomal RNA, strain: 4H-1 | AB052710 | 1414 | ena | 146475 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acetobacter cibinongensis 4H-1 | 1231339.3 | wgs | patric | 1307904 |
66792 | Acetobacter cibinongensis strain NBRC 16605 | 146475.5 | wgs | patric | 146475 |
66792 | Acetobacter cibinongensis 4H-1 | 2901808964 | draft | img | 146475 |
67770 | Acetobacter cibinongensis 4H-1 | GCA_000963925 | contig | ncbi | 146475 |
67770 | Acetobacter cibinongensis NBRC 16605 | GCA_007989305 | contig | ncbi | 146475 |
66792 | Candidatus Endoriftia persephone Tica-EPR-9o50.N | GCA_023733635 | complete | patric | 393765 |
GC content
- @ref: 67770
- GC-content: 54.5
- method: high performance liquid chromatography (HPLC)
External links
@ref: 5995
culture collection no.: DSM 15549, IFO 16605, JCM 11196, NBRC 16605, NRIC 0482, CIP 107380
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/371154 |
20218 | http://www.straininfo.net/strains/290582 |
20218 | http://www.straininfo.net/strains/290583 |
20218 | http://www.straininfo.net/strains/336916 |
20218 | http://www.straininfo.net/strains/336917 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5995 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15549) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15549 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
40567 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/4809 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |