Strain identifier

BacDive ID: 149993

Type strain: No

Species: Arthrobacter rhombi

NCBI tax ID(s): 71253 (species)

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General

@ref: 54483

BacDive-ID: 149993

keywords: Bacteria, aerobe, mesophilic

description: Arthrobacter rhombi CCUG 38812 is an aerobe, mesophilic bacterium that was isolated from Greenland halibut .

NCBI tax id

  • NCBI tax id: 71253
  • Matching level: species

doi: 10.13145/bacdive149993.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Arthrobacter
  • species: Arthrobacter rhombi
  • full scientific name: Arthrobacter rhombi Osorio et al. 1999

@ref: 54483

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter rhombi

type strain: no

Culture and growth conditions

culture temp

@refgrowthtypetemperature
54483positivegrowth30
54483nogrowth37

Physiology and metabolism

oxygen tolerance

  • @ref: 54483
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917992sucrose+fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837916199urea-hydrolysis
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837928087glycogen-fermentation
6837917716lactose-fermentation
6837917306maltose-fermentation
6837916988D-ribose-fermentation
6837917634D-glucose-fermentation
683795291gelatin+hydrolysis

enzymes

@refvalueactivityec
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68379beta-glucosidase-3.2.1.21
68382alpha-fucosidase-3.2.1.51
68379catalase+1.11.1.6
68379gelatinase+
68379urease-3.5.1.5
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    54483C14:00.414
    54483C16:00.916
    54483C13:0 ANTEISO0.412.701
    54483C14:0 ISO0.713.618
    54483C15:0 ANTEISO76.414.711
    54483C15:0 ISO7.914.621
    54483C16:0 iso1.315.626
    54483C17:0 anteiso2.316.722
    54483C17:0 iso0.216.629
    54483C18:2 ω6,9c/C18:0 ANTE0.617.724
    54483Unidentified0.714.928
    54483Unidentified7.415.026
    54483Unidentified0.217.028
    54483Unidentified0.518.136
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
54483-+---++---+-------+-+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
54483--++-+------++-+----

Isolation, sampling and environmental information

isolation

  • @ref: 54483
  • sample type: Greenland halibut (Reinhardtius hippoglossoides)
  • geographic location: NW,Newfoundland,Flemish Cap
  • country: Atlantic Ocean

isolation source categories

  • Cat1: #Host
  • Cat2: #Fishes

External links

@ref: 54483

culture collection no.: CCUG 38812

straininfo link

  • @ref: 104317
  • straininfo: 108715

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
54483Curators of the CCUGhttps://www.ccug.se/strain?id=38812Culture Collection University of Gothenburg (CCUG) (CCUG 38812)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
104317Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID108715.1