Strain identifier

BacDive ID: 149968

Type strain: No

Species: Xanthomonas campestris

Variant: pathovar pelargonii

NCBI tax ID(s): 339 (species)

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General

@ref: 54454

BacDive-ID: 149968

keywords: Bacteria

description: Xanthomonas campestris CCUG 38769 is a bacterium that was isolated from Leaf,Pelargonium peltatum cv. La France.

NCBI tax id

  • NCBI tax id: 339
  • Matching level: species

doi: 10.13145/bacdive149968.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Xanthomonas
  • species: Xanthomonas campestris
  • full scientific name: Xanthomonas campestris (Pammel 1895) Dowson 1939 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Phytomonas campestris
    20215Bacillus campestris

@ref: 54454

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacterales

family: Xanthomonadaceae

genus: Xanthomonas

species: Xanthomonas campestris

variant: pathovar pelargonii

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • @reffatty acidpercentageECL
    54454C10:00.610
    54454C14:01.814
    54454C15:03.715
    54454C16:02.316
    54454C11:0 iso3.410.605
    54454C11:0 ISO 3OH2.412.09
    54454C12:0 3OH1.813.455
    54454C12:0 ALDE ?2.210.915
    54454C13:0 iso0.412.612
    54454C14:0 ISO0.713.618
    54454C15:0 ANTEISO1314.711
    54454C15:0 ISO27.514.621
    54454C15:0 ISO 3OH2.816.135
    54454C15:1 ω6c0.914.856
    54454C16:0 iso1.115.626
    54454C16:1 ω7c17.815.819
    54454C16:1 ω9c1.815.774
    54454C17:0 anteiso0.516.722
    54454C17:0 iso2.216.629
    54454C17:1 ω5c ISO0.816.461
    54454C17:1 ω8c0.916.792
    54454C17:1 ω9c ISO316.416
    54454C18:1 ω9c0.717.769
    54454C18:2 ω6,9c/C18:0 ANTE1.117.724
    54454Unidentified0.410.249
    54454Unidentified4.814.931
    54454Unidentified0.616.296
    54454Unidentified0.318.05
    54454unknown 11.7980.511.798
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    54454C14:02.114
    54454C15:03.215
    54454C16:02.616
    54454C11:0 iso3.810.605
    54454C11:0 ISO 3OH212.09
    54454C12:0 3OH2.313.455
    54454C12:0 ALDE ?2.410.915
    54454C13:0 ISO 3OH2.914.11
    54454C15:0 ANTEISO14.414.711
    54454C15:0 ISO30.614.621
    54454C15:1 ω6c1.114.856
    54454C16:0 iso1.315.626
    54454C16:1 ω7c19.515.819
    54454C16:1 ω9c1.915.774
    54454C17:0 iso2.516.629
    54454C17:1 ω8c116.792
    54454C17:1 ω9c ISO3.316.416
    54454C18:2 ω6,9c/C18:0 ANTE1.217.724
    54454Unidentified2.114.933
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
54454-+-+-+++++++++--++--

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
54454-----++++-+-+----++--

Isolation, sampling and environmental information

isolation

  • @ref: 54454
  • sample type: Leaf,Pelargonium peltatum cv. La France
  • sampling date: 1974
  • country: New Zealand
  • origin.country: NZL
  • continent: Australia and Oceania

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

External links

@ref: 54454

culture collection no.: CCUG 38769, NCPPB 2985, LMG 7314

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
54454Curators of the CCUGhttps://www.ccug.se/strain?id=38769Culture Collection University of Gothenburg (CCUG) (CCUG 38769)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym