Strain identifier
version 9.3 (current version)
General
@ref: 54254
BacDive-ID: 149800
keywords: genome sequence, Bacteria, Gram-negative
description: Vibrio vulnificus CCUG 38431 is a Gram-negative bacterium that was isolated from Eel,healthy.
NCBI tax id
- NCBI tax id: 672
- Matching level: species
doi: 10.13145/bacdive149800.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio vulnificus
- full scientific name: Vibrio vulnificus (Reichelt et al. 1979) Farmer 1980
synonyms
- @ref: 20215
- synonym: Beneckea vulnifica
@ref: 54254
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales
family: Vibrionaceae
genus: Vibrio
species: Vibrio vulnificus
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | negative | 98.1 |
| 125438 | negative | 100 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 94.6
spore formation
- @ref: 125439
- spore formation: no
- confidence: 98.4
Isolation, sampling and environmental information
isolation
- @ref: 54254
- sample type: Eel,healthy
- sampling date: 1990
- geographic location: Valencia,Puzol,farmfish
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Fishes
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Vibrio vulnificus CECT4606 | GCA_002891755 | contig | ncbi | 672 |
| 66792 | Vibrio vulnificus strain CECT4606 | 672.543 | wgs | patric | 672 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.307 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 85.768 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 69.576 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 99.5 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 89.124 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 78.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 98.1 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 94.6 |
External links
@ref: 54254
culture collection no.: CCUG 38431, CECT 4606
straininfo link
- @ref: 104154
- straininfo: 58298
literature
- topic: Genetics
- Pubmed-ID: 25435180
- title: Impact of analytic provenance in genome analysis.
- authors: Morrison SS, Pyzh R, Jeon MS, Amaro C, Roig FJ, Baker-Austin C, Oliver JD, Gibas CJ
- journal: BMC Genomics
- DOI: 10.1186/1471-2164-15-S8-S1
- year: 2014
- mesh: Computational Biology, DNA, Bacterial/genetics, *Genes, Bacterial, *Genome, Bacterial, Molecular Sequence Annotation, *Sequence Analysis, DNA, Vibrio vulnificus/*genetics
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 54254 | Curators of the CCUG | https://www.ccug.se/strain?id=38431 | Culture Collection University of Gothenburg (CCUG) (CCUG 38431) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 104154 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID58298.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |