Strain identifier
BacDive ID: 14973
Type strain:
Species: Streptomyces ambofaciens
Strain Designation: pSAM2, JI3212 (B3)
NCBI tax ID(s): 1889 (species)
version 8.1 (current version)
General
@ref: 3879
BacDive-ID: 14973
DSM-Number: 10283
keywords: Bacteria
description: Streptomyces ambofaciens pSAM2 is a bacterium of the family Streptomycetaceae.
NCBI tax id
- NCBI tax id: 1889
- Matching level: species
doi: 10.13145/bacdive14973.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces ambofaciens
- full scientific name: Streptomyces ambofaciens Pinnert-Sindico 1954 (Approved Lists 1980)
@ref: 3879
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces ambofaciens
full scientific name: Streptomyces ambofaciens Pinnert-Sindico 1954
strain designation: pSAM2, JI3212 (B3)
type strain: no
Safety information
risk assessment
- @ref: 3879
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 3879
culture collection no.: DSM 10283
straininfo link
- @ref: 84083
- straininfo: 113358
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Genetics | 1665195 | Site-specific integration of the Streptomyces plasmid pSAM2 in Mycobacterium smegmatis. | Martin C, Mazodier P, Mediola MV, Gicquel B, Smokvina T, Thompson CJ, Davies J | Mol Microbiol | 10.1111/j.1365-2958.1991.tb02095.x | 1991 | Blotting, Southern, Chromosomes, Bacterial, DNA Transposable Elements, DNA, Bacterial/genetics/isolation & purification, Escherichia coli/genetics, Genes, Bacterial, Genetic Vectors, Genome, Bacterial, Kanamycin/pharmacology, Kanamycin Resistance/genetics, Mutagenesis, Site-Directed, Mycobacterium/drug effects/*genetics, *Plasmids, Replicon, Restriction Mapping, Streptomyces/*genetics | Enzymology |
Enzymology | 1683711 | Towards the integration of foreign DNA into the chromosome of Mycobacterium leprae. | Eiglmeier K, Honore N, Cole ST | Res Microbiol | 10.1016/0923-2508(91)90074-k | 1991 | Aspartate-Semialdehyde Dehydrogenase/genetics, Base Sequence/genetics, DNA, Bacterial/*genetics, Electrophoresis, Agar Gel, Genetic Vectors/*physiology, In Vitro Techniques, Molecular Sequence Data, Mycobacteriaceae/genetics, Mycobacterium leprae/*genetics, Plasmids/*genetics, RNA, Transfer, Pro/genetics, Restriction Mapping | Genetics |
Genetics | 1703270 | The chromosomal integration site of the Streptomyces element pSAM2 overlaps a putative tRNA gene conserved among actinomycetes. | Mazodier P, Thompson C, Boccard F | Mol Gen Genet | 10.1007/BF00633850 | 1990 | Actinomycetales/*genetics, Base Sequence, Blotting, Southern, *Genes, Bacterial, Molecular Sequence Data, Mycobacterium tuberculosis/genetics, Nucleic Acid Conformation, Plasmids/*genetics, RNA, Bacterial/genetics, RNA, Transfer/*genetics, Recombination, Genetic, Sequence Homology, Nucleic Acid, Streptomyces/*genetics | |
1852016 | Functional analysis of the Streptomyces ambofaciens element pSAM2. | Smokvina T, Boccard F, Pernodet J-L, Friedmann A, Guerineau M | Plasmid | 10.1016/0147-619x(91)90005-h | 1991 | Blotting, Southern, Chromosome Deletion, DNA Probes, DNA Transposable Elements/*genetics, Mutation/genetics, Plasmids/*genetics, Protoplasts/physiology, Restriction Mapping, Streptomyces/*genetics, Transformation, Bacterial/genetics | ||
Enzymology | 1995427 | Plasmid cloning vectors that integrate site-specifically in Streptomyces spp. | Kuhstoss S, Richardson MA, Rao RN | Gene | 10.1016/0378-1119(91)90022-4 | 1991 | Blotting, Southern, Cloning, Molecular, Escherichia coli/genetics, *Genetic Vectors, *Plasmids, *Recombination, Genetic, Streptomyces/*genetics, Transformation, Bacterial | |
Enzymology | 2536654 | Site-specific integration in Streptomyces ambofaciens: localization of integration functions in S. ambofaciens plasmid pSAM2. | Kuhstoss S, Richardson MA, Rao RN | J Bacteriol | 10.1128/jb.171.1.16-23.1989 | 1989 | Base Sequence, Blotting, Southern, Cloning, Molecular, *DNA Transposable Elements, Escherichia coli/genetics, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Plasmids, Restriction Mapping, Streptomyces/*genetics | Genetics |
Enzymology | 2657820 | Structural analysis of loci involved in pSAM2 site-specific integration in Streptomyces. | Boccard F, Smokvina T, Pernodet JL, Friedmann A, Guerineau M | Plasmid | 10.1016/0147-619x(89)90087-5 | 1989 | Amino Acid Sequence, Base Sequence, Blotting, Southern, Cloning, Molecular, DNA/genetics, Escherichia coli/genetics, Genes, Bacterial, Genetic Markers, Molecular Sequence Data, *Plasmids, Protein Biosynthesis, *Replicon, Streptomyces/*genetics | Genetics |
Genetics | 2721504 | The integrated conjugative plasmid pSAM2 of Streptomyces ambofaciens is related to temperate bacteriophages. | Boccard F, Smokvina T, Pernodet JL, Friedmann A, Guerineau M | EMBO J | 10.1002/j.1460-2075.1989.tb03460.x | 1989 | Amino Acid Sequence, Attachment Sites, Microbiological, Bacteriophages/*genetics, Base Sequence, Conjugation, Genetic, DNA Nucleotidyltransferases/genetics, DNA, Bacterial/genetics, Genes, Bacterial, Integrases, Molecular Sequence Data, *Plasmids, Recombination, Genetic, Restriction Mapping, Streptomyces/*genetics | |
Genetics | 3171544 | Genetic analysis in Streptomyces ambofaciens. | Smokvina T, Francou F, Luzzati M | J Gen Microbiol | 10.1099/00221287-134-2-395 | 1988 | Alleles, Chromosome Mapping, Crosses, Genetic, Crossing Over, Genetic, Genotype, Mutation, Recombination, Genetic, Streptomyces/*genetics | |
3436526 | Excision and integration of a self-transmissible replicon of Streptomyces ambofaciens. | Simonet JM, Boccard F, Pernodet JL, Gagnat J, Guerineau M | Gene | 10.1016/0378-1119(87)90274-5 | 1987 | Animals, DNA/genetics, Plasmids, *Replicon, Streptomyces/*genetics, Transformation, Genetic | ||
Phylogeny | 6596483 | Plasmids in different strains of Streptomyces ambofaciens: free and integrated form of plasmid pSAM2. | Pernodet JL, Simonet JM, Guerineau M | Mol Gen Genet | 10.1007/BF00328697 | 1984 | DNA, Bacterial/genetics, Nucleic Acid Hybridization, *Plasmids, Species Specificity, Streptomyces/*genetics, Transformation, Bacterial | |
Genetics | 7811067 | Cloning of Frankia species putative tRNA(Pro) genes and their efficacy for pSAM2 site-specific integration in Streptomyces lividans. | Alegre MT, Cournoyer B, Mesas JM, Guerineau M, Normand P, Pernodet JL | Appl Environ Microbiol | 10.1128/aem.60.12.4279-4283.1994 | 1994 | Actinomycetaceae/*genetics, Attachment Sites, Microbiological/genetics, Base Sequence, Cloning, Molecular, DNA Transposable Elements/*genetics, DNA, Bacterial/genetics, Genes, Bacterial/*genetics, Molecular Sequence Data, Nucleic Acid Conformation, RNA, Transfer, Pro/chemistry/*genetics, Recombination, Genetic/*genetics, Sequence Alignment, Sequence Analysis, DNA, Streptomyces/*genetics | Enzymology |
Genetics | 7934842 | Mode and origin of replication of pSAM2, a conjugative integrating element of Streptomyces ambofaciens. | Hagege J, Pernodet JL, Friedmann A, Guerineau M | Mol Microbiol | 10.1111/j.1365-2958.1993.tb00950.x | 1993 | Amino Acid Sequence, Base Sequence, Conjugation, Genetic, DNA Replication/*genetics, DNA Transposable Elements/*genetics, DNA, Bacterial/biosynthesis/chemistry/genetics, DNA, Single-Stranded/metabolism, Molecular Sequence Data, Nucleic Acid Conformation, Plasmids/genetics, Replication Origin/*genetics, Streptomyces/*genetics/metabolism | Metabolism |
Genetics | 8029324 | Identification of a gene encoding the replication initiator protein of the Streptomyces integrating element, pSAM2. | Hagege J, Boccard F, Smokvina T, Pernodet JL, Friedmann A, Guerineau M | Plasmid | 10.1006/plas.1994.1018 | 1994 | Amino Acid Sequence, Bacterial Proteins/*genetics, Base Sequence, *DNA Helicases, DNA Replication/*genetics, DNA, Bacterial, *DNA-Binding Proteins, Molecular Sequence Data, Open Reading Frames, Peptide Initiation Factors/*genetics, *Plasmids, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Streptomyces/*genetics, Trans-Activators/*genetics | Transcriptome |
Genetics | 8366038 | Transfer functions of the conjugative integrating element pSAM2 from Streptomyces ambofaciens: characterization of a kil-kor system associated with transfer. | Hagege J, Pernodet JL, Sezonov G, Gerbaud C, Friedmann A, Guerineau M | J Bacteriol | 10.1128/jb.175.17.5529-5538.1993 | 1993 | Amino Acid Sequence, Bacterial Proteins/*genetics/metabolism, Base Sequence, *Conjugation, Genetic, DNA, Bacterial, *Escherichia coli Proteins, Genes, Lethal, Genes, Regulator, Molecular Sequence Data, Open Reading Frames, Plasmids/*genetics, Restriction Mapping, Sequence Homology, Amino Acid, Streptomyces/*genetics | Metabolism |
Genetics | 8559072 | Characterization of pra, a gene for replication control in pSAM2, the integrating element of Streptomyces ambofaciens. | Sezonov G, Hagege J, Pernodet JL, Friedmann A, Guerineau M | Mol Microbiol | 10.1111/j.1365-2958.1995.mmi_17030533.x | 1995 | Amino Acid Sequence, Base Sequence, Chromosome Mapping, DNA Primers/genetics, DNA Replication/*genetics, DNA, Bacterial/genetics, *Genes, Bacterial, Molecular Sequence Data, Mutation, Plasmids/genetics, Promoter Regions, Genetic, Streptomyces/*genetics | |
Biotechnology | 9094136 | Complete conversion of antibiotic precursor to pristinamycin IIA by overexpression of Streptomyces pristinaespiralis biosynthetic genes. | Sezonov G, Blanc V, Bamas-Jacques N, Friedmann A, Pernodet JL, Guerineau M | Nat Biotechnol | 10.1038/nbt0497-349 | 1997 | Attachment Sites, Microbiological/genetics, Base Sequence, Biotechnology, Cloning, Molecular, DNA, Bacterial/chemistry/genetics, Fermentation, Gene Expression, *Genes, Bacterial, Genetic Vectors, Molecular Sequence Data, Nucleic Acid Conformation, Recombination, Genetic, Streptomyces/*genetics/*metabolism, Virginiamycin/*biosynthesis/chemistry | Enzymology |
Genetics | 9620953 | Replicase, excisionase, and integrase genes of the Streptomyces element pSAM2 constitute an operon positively regulated by the pra gene. | Sezonov G, Duchene AM, Friedmann A, Guerineau M, Pernodet JL | J Bacteriol | 10.1128/JB.180.12.3056-3061.1998 | 1998 | Base Sequence, Chromosome Mapping, DNA Helicases/genetics, DNA Nucleotidyltransferases/*genetics, DNA, Bacterial/genetics, *DNA-Binding Proteins, DNA-Directed DNA Polymerase/*genetics, *Genes, Bacterial, Integrases/*genetics, Molecular Sequence Data, Operon, Streptomyces/*enzymology/*genetics, Trans-Activators/genetics, Transcription, Genetic, Transformation, Genetic, *Viral Proteins | Enzymology |
Genetics | 9622358 | Structure of the chromosomal insertion site for pSAM2: functional analysis in Escherichia coli. | Raynal A, Tuphile K, Gerbaud C, Luther T, Guerineau M, Pernodet JL | Mol Microbiol | 10.1046/j.1365-2958.1998.00799.x | 1998 | Base Sequence, Binding Sites/genetics, Consensus Sequence, DNA Transposable Elements/*genetics, DNA, Bacterial/chemistry/*genetics, Escherichia coli/*genetics, Genes, Bacterial/genetics, Genetic Vectors/genetics, Molecular Sequence Data, Transformation, Genetic | |
Metabolism | 10671443 | KorSA from the Streptomyces integrative element pSAM2 is a central transcriptional repressor: target genes and binding sites. | Sezonov G, Possoz C, Friedmann A, Pernodet JL, Guerineau M | J Bacteriol | 10.1128/JB.182.5.1243-1250.2000 | 2000 | Base Sequence, Binding Sites, DNA Footprinting, DNA Transposable Elements/*genetics/physiology, DNA, Bacterial/genetics/metabolism, Gene Deletion, Gene Expression Regulation, Bacterial, Gene Targeting, Genes, Bacterial/genetics/physiology, Molecular Sequence Data, Protein Binding, Repressor Proteins/genetics/*metabolism, Sequence Homology, Nucleic Acid, Streptomyces/genetics/*metabolism, Transcription, Genetic | Genetics |
Metabolism | 11679075 | The integrative element pSAM2 from Streptomyces: kinetics and mode of conjugal transfer. | Possoz C, Ribard C, Gagnat J, Pernodet JL, Guerineau M | Mol Microbiol | 10.1046/j.1365-2958.2001.02618.x | 2001 | Bacterial Proteins/genetics/metabolism, *Conjugation, Genetic, DNA Transposable Elements/*genetics, DNA, Bacterial/genetics/metabolism, Escherichia coli/genetics/physiology, Molecular Sequence Data, *Sigma Factor, Streptomyces/*genetics/physiology, *Transcription Factors, Transformation, Bacterial | Genetics |
Metabolism | 11782499 | Characterization of the attP site of the integrative element pSAM2 from Streptomyces ambofaciens. | Raynal A, Friedmann A, Tuphile K, Guerineau M, Pernodet JL | Microbiology (Reading) | 10.1099/00221287-148-1-61 | 2002 | Attachment Sites, Microbiological, Base Sequence, Binding Sites, DNA Footprinting, DNA Transposable Elements/*genetics/physiology, Escherichia coli/genetics/metabolism, Integrases/genetics/*metabolism, Molecular Sequence Data, *Recombination, Genetic, Streptomyces/*genetics/metabolism | Genetics |
Genetics | 18523858 | Actinomycete integrative and conjugative elements. | te Poele EM, Bolhuis H, Dijkhuizen L | Antonie Van Leeuwenhoek | 10.1007/s10482-008-9255-x | 2008 | Actinobacteria/chemistry/classification/*genetics/metabolism, Bacterial Proteins/genetics/metabolism, Base Pairing, Base Sequence, *Conjugation, Genetic, DNA Replication, DNA, Bacterial/chemistry/genetics, Evolution, Molecular, Gene Expression Regulation, Bacterial, Gene Transfer, Horizontal, Genome, Bacterial, Geography, Phylogeny, RNA, Transfer/chemistry/*genetics/metabolism | Phylogeny |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
3879 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10283) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10283 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
84083 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID113358.1 | StrainInfo: A central database for resolving microbial strain identifiers |