Strain identifier

BacDive ID: 14973

Type strain: No

Species: Streptomyces ambofaciens

Strain Designation: pSAM2, JI3212 (B3)

NCBI tax ID(s): 1889 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3879

BacDive-ID: 14973

DSM-Number: 10283

keywords: Bacteria

description: Streptomyces ambofaciens pSAM2 is a bacterium of the family Streptomycetaceae.

NCBI tax id

  • NCBI tax id: 1889
  • Matching level: species

doi: 10.13145/bacdive14973.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces ambofaciens
  • full scientific name: Streptomyces ambofaciens Pinnert-Sindico 1954 (Approved Lists 1980)

@ref: 3879

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces ambofaciens

full scientific name: Streptomyces ambofaciens Pinnert-Sindico 1954

strain designation: pSAM2, JI3212 (B3)

type strain: no

Safety information

risk assessment

  • @ref: 3879
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

External links

@ref: 3879

culture collection no.: DSM 10283

straininfo link

  • @ref: 84083
  • straininfo: 113358

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics1665195Site-specific integration of the Streptomyces plasmid pSAM2 in Mycobacterium smegmatis.Martin C, Mazodier P, Mediola MV, Gicquel B, Smokvina T, Thompson CJ, Davies JMol Microbiol10.1111/j.1365-2958.1991.tb02095.x1991Blotting, Southern, Chromosomes, Bacterial, DNA Transposable Elements, DNA, Bacterial/genetics/isolation & purification, Escherichia coli/genetics, Genes, Bacterial, Genetic Vectors, Genome, Bacterial, Kanamycin/pharmacology, Kanamycin Resistance/genetics, Mutagenesis, Site-Directed, Mycobacterium/drug effects/*genetics, *Plasmids, Replicon, Restriction Mapping, Streptomyces/*geneticsEnzymology
Enzymology1683711Towards the integration of foreign DNA into the chromosome of Mycobacterium leprae.Eiglmeier K, Honore N, Cole STRes Microbiol10.1016/0923-2508(91)90074-k1991Aspartate-Semialdehyde Dehydrogenase/genetics, Base Sequence/genetics, DNA, Bacterial/*genetics, Electrophoresis, Agar Gel, Genetic Vectors/*physiology, In Vitro Techniques, Molecular Sequence Data, Mycobacteriaceae/genetics, Mycobacterium leprae/*genetics, Plasmids/*genetics, RNA, Transfer, Pro/genetics, Restriction MappingGenetics
Genetics1703270The chromosomal integration site of the Streptomyces element pSAM2 overlaps a putative tRNA gene conserved among actinomycetes.Mazodier P, Thompson C, Boccard FMol Gen Genet10.1007/BF006338501990Actinomycetales/*genetics, Base Sequence, Blotting, Southern, *Genes, Bacterial, Molecular Sequence Data, Mycobacterium tuberculosis/genetics, Nucleic Acid Conformation, Plasmids/*genetics, RNA, Bacterial/genetics, RNA, Transfer/*genetics, Recombination, Genetic, Sequence Homology, Nucleic Acid, Streptomyces/*genetics
1852016Functional analysis of the Streptomyces ambofaciens element pSAM2.Smokvina T, Boccard F, Pernodet J-L, Friedmann A, Guerineau MPlasmid10.1016/0147-619x(91)90005-h1991Blotting, Southern, Chromosome Deletion, DNA Probes, DNA Transposable Elements/*genetics, Mutation/genetics, Plasmids/*genetics, Protoplasts/physiology, Restriction Mapping, Streptomyces/*genetics, Transformation, Bacterial/genetics
Enzymology1995427Plasmid cloning vectors that integrate site-specifically in Streptomyces spp.Kuhstoss S, Richardson MA, Rao RNGene10.1016/0378-1119(91)90022-41991Blotting, Southern, Cloning, Molecular, Escherichia coli/genetics, *Genetic Vectors, *Plasmids, *Recombination, Genetic, Streptomyces/*genetics, Transformation, Bacterial
Enzymology2536654Site-specific integration in Streptomyces ambofaciens: localization of integration functions in S. ambofaciens plasmid pSAM2.Kuhstoss S, Richardson MA, Rao RNJ Bacteriol10.1128/jb.171.1.16-23.19891989Base Sequence, Blotting, Southern, Cloning, Molecular, *DNA Transposable Elements, Escherichia coli/genetics, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Plasmids, Restriction Mapping, Streptomyces/*geneticsGenetics
Enzymology2657820Structural analysis of loci involved in pSAM2 site-specific integration in Streptomyces.Boccard F, Smokvina T, Pernodet JL, Friedmann A, Guerineau MPlasmid10.1016/0147-619x(89)90087-51989Amino Acid Sequence, Base Sequence, Blotting, Southern, Cloning, Molecular, DNA/genetics, Escherichia coli/genetics, Genes, Bacterial, Genetic Markers, Molecular Sequence Data, *Plasmids, Protein Biosynthesis, *Replicon, Streptomyces/*geneticsGenetics
Genetics2721504The integrated conjugative plasmid pSAM2 of Streptomyces ambofaciens is related to temperate bacteriophages.Boccard F, Smokvina T, Pernodet JL, Friedmann A, Guerineau MEMBO J10.1002/j.1460-2075.1989.tb03460.x1989Amino Acid Sequence, Attachment Sites, Microbiological, Bacteriophages/*genetics, Base Sequence, Conjugation, Genetic, DNA Nucleotidyltransferases/genetics, DNA, Bacterial/genetics, Genes, Bacterial, Integrases, Molecular Sequence Data, *Plasmids, Recombination, Genetic, Restriction Mapping, Streptomyces/*genetics
Genetics3171544Genetic analysis in Streptomyces ambofaciens.Smokvina T, Francou F, Luzzati MJ Gen Microbiol10.1099/00221287-134-2-3951988Alleles, Chromosome Mapping, Crosses, Genetic, Crossing Over, Genetic, Genotype, Mutation, Recombination, Genetic, Streptomyces/*genetics
3436526Excision and integration of a self-transmissible replicon of Streptomyces ambofaciens.Simonet JM, Boccard F, Pernodet JL, Gagnat J, Guerineau MGene10.1016/0378-1119(87)90274-51987Animals, DNA/genetics, Plasmids, *Replicon, Streptomyces/*genetics, Transformation, Genetic
Phylogeny6596483Plasmids in different strains of Streptomyces ambofaciens: free and integrated form of plasmid pSAM2.Pernodet JL, Simonet JM, Guerineau MMol Gen Genet10.1007/BF003286971984DNA, Bacterial/genetics, Nucleic Acid Hybridization, *Plasmids, Species Specificity, Streptomyces/*genetics, Transformation, Bacterial
Genetics7811067Cloning of Frankia species putative tRNA(Pro) genes and their efficacy for pSAM2 site-specific integration in Streptomyces lividans.Alegre MT, Cournoyer B, Mesas JM, Guerineau M, Normand P, Pernodet JLAppl Environ Microbiol10.1128/aem.60.12.4279-4283.19941994Actinomycetaceae/*genetics, Attachment Sites, Microbiological/genetics, Base Sequence, Cloning, Molecular, DNA Transposable Elements/*genetics, DNA, Bacterial/genetics, Genes, Bacterial/*genetics, Molecular Sequence Data, Nucleic Acid Conformation, RNA, Transfer, Pro/chemistry/*genetics, Recombination, Genetic/*genetics, Sequence Alignment, Sequence Analysis, DNA, Streptomyces/*geneticsEnzymology
Genetics7934842Mode and origin of replication of pSAM2, a conjugative integrating element of Streptomyces ambofaciens.Hagege J, Pernodet JL, Friedmann A, Guerineau MMol Microbiol10.1111/j.1365-2958.1993.tb00950.x1993Amino Acid Sequence, Base Sequence, Conjugation, Genetic, DNA Replication/*genetics, DNA Transposable Elements/*genetics, DNA, Bacterial/biosynthesis/chemistry/genetics, DNA, Single-Stranded/metabolism, Molecular Sequence Data, Nucleic Acid Conformation, Plasmids/genetics, Replication Origin/*genetics, Streptomyces/*genetics/metabolismMetabolism
Genetics8029324Identification of a gene encoding the replication initiator protein of the Streptomyces integrating element, pSAM2.Hagege J, Boccard F, Smokvina T, Pernodet JL, Friedmann A, Guerineau MPlasmid10.1006/plas.1994.10181994Amino Acid Sequence, Bacterial Proteins/*genetics, Base Sequence, *DNA Helicases, DNA Replication/*genetics, DNA, Bacterial, *DNA-Binding Proteins, Molecular Sequence Data, Open Reading Frames, Peptide Initiation Factors/*genetics, *Plasmids, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Streptomyces/*genetics, Trans-Activators/*geneticsTranscriptome
Genetics8366038Transfer functions of the conjugative integrating element pSAM2 from Streptomyces ambofaciens: characterization of a kil-kor system associated with transfer.Hagege J, Pernodet JL, Sezonov G, Gerbaud C, Friedmann A, Guerineau MJ Bacteriol10.1128/jb.175.17.5529-5538.19931993Amino Acid Sequence, Bacterial Proteins/*genetics/metabolism, Base Sequence, *Conjugation, Genetic, DNA, Bacterial, *Escherichia coli Proteins, Genes, Lethal, Genes, Regulator, Molecular Sequence Data, Open Reading Frames, Plasmids/*genetics, Restriction Mapping, Sequence Homology, Amino Acid, Streptomyces/*geneticsMetabolism
Genetics8559072Characterization of pra, a gene for replication control in pSAM2, the integrating element of Streptomyces ambofaciens.Sezonov G, Hagege J, Pernodet JL, Friedmann A, Guerineau MMol Microbiol10.1111/j.1365-2958.1995.mmi_17030533.x1995Amino Acid Sequence, Base Sequence, Chromosome Mapping, DNA Primers/genetics, DNA Replication/*genetics, DNA, Bacterial/genetics, *Genes, Bacterial, Molecular Sequence Data, Mutation, Plasmids/genetics, Promoter Regions, Genetic, Streptomyces/*genetics
Biotechnology9094136Complete conversion of antibiotic precursor to pristinamycin IIA by overexpression of Streptomyces pristinaespiralis biosynthetic genes.Sezonov G, Blanc V, Bamas-Jacques N, Friedmann A, Pernodet JL, Guerineau MNat Biotechnol10.1038/nbt0497-3491997Attachment Sites, Microbiological/genetics, Base Sequence, Biotechnology, Cloning, Molecular, DNA, Bacterial/chemistry/genetics, Fermentation, Gene Expression, *Genes, Bacterial, Genetic Vectors, Molecular Sequence Data, Nucleic Acid Conformation, Recombination, Genetic, Streptomyces/*genetics/*metabolism, Virginiamycin/*biosynthesis/chemistryEnzymology
Genetics9620953Replicase, excisionase, and integrase genes of the Streptomyces element pSAM2 constitute an operon positively regulated by the pra gene.Sezonov G, Duchene AM, Friedmann A, Guerineau M, Pernodet JLJ Bacteriol10.1128/JB.180.12.3056-3061.19981998Base Sequence, Chromosome Mapping, DNA Helicases/genetics, DNA Nucleotidyltransferases/*genetics, DNA, Bacterial/genetics, *DNA-Binding Proteins, DNA-Directed DNA Polymerase/*genetics, *Genes, Bacterial, Integrases/*genetics, Molecular Sequence Data, Operon, Streptomyces/*enzymology/*genetics, Trans-Activators/genetics, Transcription, Genetic, Transformation, Genetic, *Viral ProteinsEnzymology
Genetics9622358Structure of the chromosomal insertion site for pSAM2: functional analysis in Escherichia coli.Raynal A, Tuphile K, Gerbaud C, Luther T, Guerineau M, Pernodet JLMol Microbiol10.1046/j.1365-2958.1998.00799.x1998Base Sequence, Binding Sites/genetics, Consensus Sequence, DNA Transposable Elements/*genetics, DNA, Bacterial/chemistry/*genetics, Escherichia coli/*genetics, Genes, Bacterial/genetics, Genetic Vectors/genetics, Molecular Sequence Data, Transformation, Genetic
Metabolism10671443KorSA from the Streptomyces integrative element pSAM2 is a central transcriptional repressor: target genes and binding sites.Sezonov G, Possoz C, Friedmann A, Pernodet JL, Guerineau MJ Bacteriol10.1128/JB.182.5.1243-1250.20002000Base Sequence, Binding Sites, DNA Footprinting, DNA Transposable Elements/*genetics/physiology, DNA, Bacterial/genetics/metabolism, Gene Deletion, Gene Expression Regulation, Bacterial, Gene Targeting, Genes, Bacterial/genetics/physiology, Molecular Sequence Data, Protein Binding, Repressor Proteins/genetics/*metabolism, Sequence Homology, Nucleic Acid, Streptomyces/genetics/*metabolism, Transcription, GeneticGenetics
Metabolism11679075The integrative element pSAM2 from Streptomyces: kinetics and mode of conjugal transfer.Possoz C, Ribard C, Gagnat J, Pernodet JL, Guerineau MMol Microbiol10.1046/j.1365-2958.2001.02618.x2001Bacterial Proteins/genetics/metabolism, *Conjugation, Genetic, DNA Transposable Elements/*genetics, DNA, Bacterial/genetics/metabolism, Escherichia coli/genetics/physiology, Molecular Sequence Data, *Sigma Factor, Streptomyces/*genetics/physiology, *Transcription Factors, Transformation, BacterialGenetics
Metabolism11782499Characterization of the attP site of the integrative element pSAM2 from Streptomyces ambofaciens.Raynal A, Friedmann A, Tuphile K, Guerineau M, Pernodet JLMicrobiology (Reading)10.1099/00221287-148-1-612002Attachment Sites, Microbiological, Base Sequence, Binding Sites, DNA Footprinting, DNA Transposable Elements/*genetics/physiology, Escherichia coli/genetics/metabolism, Integrases/genetics/*metabolism, Molecular Sequence Data, *Recombination, Genetic, Streptomyces/*genetics/metabolismGenetics
Genetics18523858Actinomycete integrative and conjugative elements.te Poele EM, Bolhuis H, Dijkhuizen LAntonie Van Leeuwenhoek10.1007/s10482-008-9255-x2008Actinobacteria/chemistry/classification/*genetics/metabolism, Bacterial Proteins/genetics/metabolism, Base Pairing, Base Sequence, *Conjugation, Genetic, DNA Replication, DNA, Bacterial/chemistry/genetics, Evolution, Molecular, Gene Expression Regulation, Bacterial, Gene Transfer, Horizontal, Genome, Bacterial, Geography, Phylogeny, RNA, Transfer/chemistry/*genetics/metabolismPhylogeny

Reference

@idauthorscataloguedoi/urltitle
3879Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10283)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10283
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
84083Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID113358.1StrainInfo: A central database for resolving microbial strain identifiers