Strain identifier
BacDive ID: 14972
Type strain:
Species: Streptomyces ambofaciens
Strain Designation: pSAM2, B2, B-2420
Strain history: CIP <- 1997, IFO <- 1975, RTCI <- 1997, NRRL: strain B-2420
NCBI tax ID(s): 1889 (species)
General
@ref: 3878
BacDive-ID: 14972
DSM-Number: 10282
keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped
description: Streptomyces ambofaciens pSAM2 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from Environment, Soil.
NCBI tax id
- NCBI tax id: 1889
- Matching level: species
strain history
- @ref: 116325
- history: CIP <- 1997, IFO <- 1975, RTCI <- 1997, NRRL: strain B-2420
doi: 10.13145/bacdive14972.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces ambofaciens
- full scientific name: Streptomyces ambofaciens Pinnert-Sindico 1954 (Approved Lists 1980)
@ref: 3878
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces ambofaciens
full scientific name: Streptomyces ambofaciens Pinnert-Sindico 1954
strain designation: pSAM2, B2, B-2420
type strain: no
Morphology
cell morphology
- @ref: 116325
- gram stain: positive
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 116325
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
41480 | MEDIUM 128 - for Nocardia brevicatena, Nocardia flavorosea subsp. fusca and Streptomyces ambofaciens | yes | Distilled water make up to (1000.000 ml);Maltose (10.000 g);Agar (20.000g);Yeast extract (1.000 g);Beef extract (1.000 g);Casamino acids (2.000 g) | |
116325 | CIP Medium 57 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=57 | |
116325 | CIP Medium 129 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=129 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
41480 | positive | growth | 30 | mesophilic |
116325 | positive | growth | 10-41 | |
116325 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 116325
- oxygen tolerance: obligate aerobe
halophily
- @ref: 116325
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-10 %
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | + | builds acid from | 28087 |
68371 | starch | + | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | maltose | + | builds acid from | 17306 |
68371 | salicin | + | builds acid from | 17814 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | + | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
116325 | citrate | + | carbon source | 16947 |
116325 | esculin | - | hydrolysis | 4853 |
116325 | hippurate | - | hydrolysis | 606565 |
116325 | nitrate | - | reduction | 17632 |
116325 | nitrite | - | reduction | 16301 |
116325 | nitrate | - | respiration | 17632 |
metabolite production
- @ref: 116325
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
116325 | 15688 | acetoin | - | |
116325 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
116325 | oxidase | - | |
116325 | beta-galactosidase | + | 3.2.1.23 |
116325 | alcohol dehydrogenase | - | 1.1.1.1 |
116325 | gelatinase | - | |
116325 | amylase | + | |
116325 | DNase | - | |
116325 | caseinase | + | 3.4.21.50 |
116325 | catalase | + | 1.11.1.6 |
116325 | tween esterase | - | |
116325 | gamma-glutamyltransferase | + | 2.3.2.2 |
116325 | lecithinase | + | |
116325 | lipase | - | |
116325 | lysine decarboxylase | - | 4.1.1.18 |
116325 | ornithine decarboxylase | - | 4.1.1.17 |
116325 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
116325 | protease | + | |
116325 | tryptophan deaminase | - | |
116325 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | + | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116325 | - | + | + | + | + | + | - | - | - | - | + | + | + | + | - | + | + | + | + | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116325 | - | - | - | - | + | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | - | + | - | + | + | + | +/- | + | +/- | - | - | + | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116325 | + | + | + | + | + | - | - | - | - | + | + | + | + | + | - | + | + | + | + | + | + | + | + | + | - | - | + | - | - | - | - | + | + | + | - | + | - | - | - | - | - | + | - | + | - | - | + | - | - | + | + | - | - | + | + | - | - | - | + | + | + | - | + | + | + | - | - | - | - | - | - | - | + | - | - | - | - | - | + | + | + | - | - | - | - | - | + | - | + | + | + | + | - | + | + | + | + | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 116325
- sample type: Environment, Soil
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
3878 | 1 | Risk group (German classification) |
116325 | 1 | Risk group (French classification) |
External links
@ref: 3878
culture collection no.: DSM 10282, ATCC 15154, CIP 105083, IFO 13685
straininfo link
@ref | straininfo |
---|---|
84081 | 92904 |
84082 | 113357 |
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Genetics | 1665195 | Site-specific integration of the Streptomyces plasmid pSAM2 in Mycobacterium smegmatis. | Martin C, Mazodier P, Mediola MV, Gicquel B, Smokvina T, Thompson CJ, Davies J | Mol Microbiol | 10.1111/j.1365-2958.1991.tb02095.x | 1991 | Blotting, Southern, Chromosomes, Bacterial, DNA Transposable Elements, DNA, Bacterial/genetics/isolation & purification, Escherichia coli/genetics, Genes, Bacterial, Genetic Vectors, Genome, Bacterial, Kanamycin/pharmacology, Kanamycin Resistance/genetics, Mutagenesis, Site-Directed, Mycobacterium/drug effects/*genetics, *Plasmids, Replicon, Restriction Mapping, Streptomyces/*genetics | Enzymology |
Enzymology | 1683711 | Towards the integration of foreign DNA into the chromosome of Mycobacterium leprae. | Eiglmeier K, Honore N, Cole ST | Res Microbiol | 10.1016/0923-2508(91)90074-k | 1991 | Aspartate-Semialdehyde Dehydrogenase/genetics, Base Sequence/genetics, DNA, Bacterial/*genetics, Electrophoresis, Agar Gel, Genetic Vectors/*physiology, In Vitro Techniques, Molecular Sequence Data, Mycobacteriaceae/genetics, Mycobacterium leprae/*genetics, Plasmids/*genetics, RNA, Transfer, Pro/genetics, Restriction Mapping | Genetics |
Genetics | 1703270 | The chromosomal integration site of the Streptomyces element pSAM2 overlaps a putative tRNA gene conserved among actinomycetes. | Mazodier P, Thompson C, Boccard F | Mol Gen Genet | 10.1007/BF00633850 | 1990 | Actinomycetales/*genetics, Base Sequence, Blotting, Southern, *Genes, Bacterial, Molecular Sequence Data, Mycobacterium tuberculosis/genetics, Nucleic Acid Conformation, Plasmids/*genetics, RNA, Bacterial/genetics, RNA, Transfer/*genetics, Recombination, Genetic, Sequence Homology, Nucleic Acid, Streptomyces/*genetics | |
1852016 | Functional analysis of the Streptomyces ambofaciens element pSAM2. | Smokvina T, Boccard F, Pernodet J-L, Friedmann A, Guerineau M | Plasmid | 10.1016/0147-619x(91)90005-h | 1991 | Blotting, Southern, Chromosome Deletion, DNA Probes, DNA Transposable Elements/*genetics, Mutation/genetics, Plasmids/*genetics, Protoplasts/physiology, Restriction Mapping, Streptomyces/*genetics, Transformation, Bacterial/genetics | ||
Enzymology | 1964172 | Characterization of FP22, a large streptomycete bacteriophage with DNA insensitive to cleavage by many restriction enzymes. | Hahn DR, McHenney MA, Baltz RH | J Gen Microbiol | 10.1099/00221287-136-12-2395 | 1990 | Bacteriophages/*genetics/immunology, Base Composition, Chromosome Deletion, DNA Restriction Enzymes/*metabolism, DNA, Viral/immunology/*metabolism, Kinetics, Mutation, Restriction Mapping, Sequence Homology, Nucleic Acid, Streptomyces | Metabolism |
Enzymology | 1995427 | Plasmid cloning vectors that integrate site-specifically in Streptomyces spp. | Kuhstoss S, Richardson MA, Rao RN | Gene | 10.1016/0378-1119(91)90022-4 | 1991 | Blotting, Southern, Cloning, Molecular, Escherichia coli/genetics, *Genetic Vectors, *Plasmids, *Recombination, Genetic, Streptomyces/*genetics, Transformation, Bacterial | |
Enzymology | 2178141 | Pulsed-field gel electrophoresis analysis of the genome of Streptomyces ambofaciens strains. | Leblond P, Francou FX, Simonet JM, Decaris B | FEMS Microbiol Lett | 10.1016/0378-1097(90)90349-u | 1990 | Blotting, Southern, DNA Restriction Enzymes/metabolism, DNA, Bacterial/*analysis/genetics, Densitometry, Electrophoresis, *Genes, Bacterial, *Plasmids, Sequence Homology, Nucleic Acid, Streptomyces/*genetics | Metabolism |
Biotechnology | 2268160 | Selection of Streptomyces ambofaciens mutants that produce large quantities of spiramycin and determination of optimal conditions for spiramycin production. | Ford LM, Eaton TE, Godfrey OW | Appl Environ Microbiol | 10.1128/aem.56.11.3511-3514.1990 | 1990 | Biotechnology, Culture Media, Genetic Engineering, Mutation, Spiramycin/*biosynthesis, Streptomyces/genetics/isolation & purification/*metabolism | Cultivation |
Enzymology | 2536654 | Site-specific integration in Streptomyces ambofaciens: localization of integration functions in S. ambofaciens plasmid pSAM2. | Kuhstoss S, Richardson MA, Rao RN | J Bacteriol | 10.1128/jb.171.1.16-23.1989 | 1989 | Base Sequence, Blotting, Southern, Cloning, Molecular, *DNA Transposable Elements, Escherichia coli/genetics, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Plasmids, Restriction Mapping, Streptomyces/*genetics | Genetics |
Enzymology | 2657820 | Structural analysis of loci involved in pSAM2 site-specific integration in Streptomyces. | Boccard F, Smokvina T, Pernodet JL, Friedmann A, Guerineau M | Plasmid | 10.1016/0147-619x(89)90087-5 | 1989 | Amino Acid Sequence, Base Sequence, Blotting, Southern, Cloning, Molecular, DNA/genetics, Escherichia coli/genetics, Genes, Bacterial, Genetic Markers, Molecular Sequence Data, *Plasmids, Protein Biosynthesis, *Replicon, Streptomyces/*genetics | Genetics |
Genetics | 2721504 | The integrated conjugative plasmid pSAM2 of Streptomyces ambofaciens is related to temperate bacteriophages. | Boccard F, Smokvina T, Pernodet JL, Friedmann A, Guerineau M | EMBO J | 10.1002/j.1460-2075.1989.tb03460.x | 1989 | Amino Acid Sequence, Attachment Sites, Microbiological, Bacteriophages/*genetics, Base Sequence, Conjugation, Genetic, DNA Nucleotidyltransferases/genetics, DNA, Bacterial/genetics, Genes, Bacterial, Integrases, Molecular Sequence Data, *Plasmids, Recombination, Genetic, Restriction Mapping, Streptomyces/*genetics | |
Genetics | 3171544 | Genetic analysis in Streptomyces ambofaciens. | Smokvina T, Francou F, Luzzati M | J Gen Microbiol | 10.1099/00221287-134-2-395 | 1988 | Alleles, Chromosome Mapping, Crosses, Genetic, Crossing Over, Genetic, Genotype, Mutation, Recombination, Genetic, Streptomyces/*genetics | |
3436526 | Excision and integration of a self-transmissible replicon of Streptomyces ambofaciens. | Simonet JM, Boccard F, Pernodet JL, Gagnat J, Guerineau M | Gene | 10.1016/0378-1119(87)90274-5 | 1987 | Animals, DNA/genetics, Plasmids, *Replicon, Streptomyces/*genetics, Transformation, Genetic | ||
Phylogeny | 6596483 | Plasmids in different strains of Streptomyces ambofaciens: free and integrated form of plasmid pSAM2. | Pernodet JL, Simonet JM, Guerineau M | Mol Gen Genet | 10.1007/BF00328697 | 1984 | DNA, Bacterial/genetics, Nucleic Acid Hybridization, *Plasmids, Species Specificity, Streptomyces/*genetics, Transformation, Bacterial | |
Genetics | 7811067 | Cloning of Frankia species putative tRNA(Pro) genes and their efficacy for pSAM2 site-specific integration in Streptomyces lividans. | Alegre MT, Cournoyer B, Mesas JM, Guerineau M, Normand P, Pernodet JL | Appl Environ Microbiol | 10.1128/aem.60.12.4279-4283.1994 | 1994 | Actinomycetaceae/*genetics, Attachment Sites, Microbiological/genetics, Base Sequence, Cloning, Molecular, DNA Transposable Elements/*genetics, DNA, Bacterial/genetics, Genes, Bacterial/*genetics, Molecular Sequence Data, Nucleic Acid Conformation, RNA, Transfer, Pro/chemistry/*genetics, Recombination, Genetic/*genetics, Sequence Alignment, Sequence Analysis, DNA, Streptomyces/*genetics | Enzymology |
Metabolism | 7928973 | Amino acid catabolism and antibiotic synthesis: valine is a source of precursors for macrolide biosynthesis in Streptomyces ambofaciens and Streptomyces fradiae. | Tang L, Zhang YX, Hutchinson CR | J Bacteriol | 10.1128/jb.176.19.6107-6119.1994 | 1994 | Amino Acid Oxidoreductases/*genetics, Amino Acid Sequence, Base Sequence, Butyrates/metabolism, *Cinnamates, Cloning, Molecular, Drug Resistance, Microbial/genetics, Hygromycin B/analogs & derivatives/pharmacology, Isobutyrates, Models, Biological, Molecular Sequence Data, Mutagenesis, Insertional, Propionates/metabolism, Sequence Analysis, DNA, Spiramycin/*biosynthesis, Streptomyces/enzymology/genetics/*metabolism, Tylosin/*biosynthesis, Valine/*metabolism | Enzymology |
Genetics | 7934842 | Mode and origin of replication of pSAM2, a conjugative integrating element of Streptomyces ambofaciens. | Hagege J, Pernodet JL, Friedmann A, Guerineau M | Mol Microbiol | 10.1111/j.1365-2958.1993.tb00950.x | 1993 | Amino Acid Sequence, Base Sequence, Conjugation, Genetic, DNA Replication/*genetics, DNA Transposable Elements/*genetics, DNA, Bacterial/biosynthesis/chemistry/genetics, DNA, Single-Stranded/metabolism, Molecular Sequence Data, Nucleic Acid Conformation, Plasmids/genetics, Replication Origin/*genetics, Streptomyces/*genetics/metabolism | Metabolism |
Genetics | 8029324 | Identification of a gene encoding the replication initiator protein of the Streptomyces integrating element, pSAM2. | Hagege J, Boccard F, Smokvina T, Pernodet JL, Friedmann A, Guerineau M | Plasmid | 10.1006/plas.1994.1018 | 1994 | Amino Acid Sequence, Bacterial Proteins/*genetics, Base Sequence, *DNA Helicases, DNA Replication/*genetics, DNA, Bacterial, *DNA-Binding Proteins, Molecular Sequence Data, Open Reading Frames, Peptide Initiation Factors/*genetics, *Plasmids, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Streptomyces/*genetics, Trans-Activators/*genetics | Transcriptome |
Genetics | 8366038 | Transfer functions of the conjugative integrating element pSAM2 from Streptomyces ambofaciens: characterization of a kil-kor system associated with transfer. | Hagege J, Pernodet JL, Sezonov G, Gerbaud C, Friedmann A, Guerineau M | J Bacteriol | 10.1128/jb.175.17.5529-5538.1993 | 1993 | Amino Acid Sequence, Bacterial Proteins/*genetics/metabolism, Base Sequence, *Conjugation, Genetic, DNA, Bacterial, *Escherichia coli Proteins, Genes, Lethal, Genes, Regulator, Molecular Sequence Data, Open Reading Frames, Plasmids/*genetics, Restriction Mapping, Sequence Homology, Amino Acid, Streptomyces/*genetics | Metabolism |
Genetics | 8559072 | Characterization of pra, a gene for replication control in pSAM2, the integrating element of Streptomyces ambofaciens. | Sezonov G, Hagege J, Pernodet JL, Friedmann A, Guerineau M | Mol Microbiol | 10.1111/j.1365-2958.1995.mmi_17030533.x | 1995 | Amino Acid Sequence, Base Sequence, Chromosome Mapping, DNA Primers/genetics, DNA Replication/*genetics, DNA, Bacterial/genetics, *Genes, Bacterial, Molecular Sequence Data, Mutation, Plasmids/genetics, Promoter Regions, Genetic, Streptomyces/*genetics | |
Biotechnology | 9094136 | Complete conversion of antibiotic precursor to pristinamycin IIA by overexpression of Streptomyces pristinaespiralis biosynthetic genes. | Sezonov G, Blanc V, Bamas-Jacques N, Friedmann A, Pernodet JL, Guerineau M | Nat Biotechnol | 10.1038/nbt0497-349 | 1997 | Attachment Sites, Microbiological/genetics, Base Sequence, Biotechnology, Cloning, Molecular, DNA, Bacterial/chemistry/genetics, Fermentation, Gene Expression, *Genes, Bacterial, Genetic Vectors, Molecular Sequence Data, Nucleic Acid Conformation, Recombination, Genetic, Streptomyces/*genetics/*metabolism, Virginiamycin/*biosynthesis/chemistry | Enzymology |
Genetics | 9620953 | Replicase, excisionase, and integrase genes of the Streptomyces element pSAM2 constitute an operon positively regulated by the pra gene. | Sezonov G, Duchene AM, Friedmann A, Guerineau M, Pernodet JL | J Bacteriol | 10.1128/JB.180.12.3056-3061.1998 | 1998 | Base Sequence, Chromosome Mapping, DNA Helicases/genetics, DNA Nucleotidyltransferases/*genetics, DNA, Bacterial/genetics, *DNA-Binding Proteins, DNA-Directed DNA Polymerase/*genetics, *Genes, Bacterial, Integrases/*genetics, Molecular Sequence Data, Operon, Streptomyces/*enzymology/*genetics, Trans-Activators/genetics, Transcription, Genetic, Transformation, Genetic, *Viral Proteins | Enzymology |
Genetics | 9622358 | Structure of the chromosomal insertion site for pSAM2: functional analysis in Escherichia coli. | Raynal A, Tuphile K, Gerbaud C, Luther T, Guerineau M, Pernodet JL | Mol Microbiol | 10.1046/j.1365-2958.1998.00799.x | 1998 | Base Sequence, Binding Sites/genetics, Consensus Sequence, DNA Transposable Elements/*genetics, DNA, Bacterial/chemistry/*genetics, Escherichia coli/*genetics, Genes, Bacterial/genetics, Genetic Vectors/genetics, Molecular Sequence Data, Transformation, Genetic | |
Metabolism | 10671443 | KorSA from the Streptomyces integrative element pSAM2 is a central transcriptional repressor: target genes and binding sites. | Sezonov G, Possoz C, Friedmann A, Pernodet JL, Guerineau M | J Bacteriol | 10.1128/JB.182.5.1243-1250.2000 | 2000 | Base Sequence, Binding Sites, DNA Footprinting, DNA Transposable Elements/*genetics/physiology, DNA, Bacterial/genetics/metabolism, Gene Deletion, Gene Expression Regulation, Bacterial, Gene Targeting, Genes, Bacterial/genetics/physiology, Molecular Sequence Data, Protein Binding, Repressor Proteins/genetics/*metabolism, Sequence Homology, Nucleic Acid, Streptomyces/genetics/*metabolism, Transcription, Genetic | Genetics |
Metabolism | 11679075 | The integrative element pSAM2 from Streptomyces: kinetics and mode of conjugal transfer. | Possoz C, Ribard C, Gagnat J, Pernodet JL, Guerineau M | Mol Microbiol | 10.1046/j.1365-2958.2001.02618.x | 2001 | Bacterial Proteins/genetics/metabolism, *Conjugation, Genetic, DNA Transposable Elements/*genetics, DNA, Bacterial/genetics/metabolism, Escherichia coli/genetics/physiology, Molecular Sequence Data, *Sigma Factor, Streptomyces/*genetics/physiology, *Transcription Factors, Transformation, Bacterial | Genetics |
Metabolism | 11782499 | Characterization of the attP site of the integrative element pSAM2 from Streptomyces ambofaciens. | Raynal A, Friedmann A, Tuphile K, Guerineau M, Pernodet JL | Microbiology (Reading) | 10.1099/00221287-148-1-61 | 2002 | Attachment Sites, Microbiological, Base Sequence, Binding Sites, DNA Footprinting, DNA Transposable Elements/*genetics/physiology, Escherichia coli/genetics/metabolism, Integrases/genetics/*metabolism, Molecular Sequence Data, *Recombination, Genetic, Streptomyces/*genetics/metabolism | Genetics |
Genetics | 18523858 | Actinomycete integrative and conjugative elements. | te Poele EM, Bolhuis H, Dijkhuizen L | Antonie Van Leeuwenhoek | 10.1007/s10482-008-9255-x | 2008 | Actinobacteria/chemistry/classification/*genetics/metabolism, Bacterial Proteins/genetics/metabolism, Base Pairing, Base Sequence, *Conjugation, Genetic, DNA Replication, DNA, Bacterial/chemistry/genetics, Evolution, Molecular, Gene Expression Regulation, Bacterial, Gene Transfer, Horizontal, Genome, Bacterial, Geography, Phylogeny, RNA, Transfer/chemistry/*genetics/metabolism | Phylogeny |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
3878 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10282) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10282 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
41480 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17062 | ||
68371 | Automatically annotated from API 50CH acid | |||
68382 | Automatically annotated from API zym | |||
84081 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92904.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
84082 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID113357.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
116325 | Curators of the CIP | Collection of Institut Pasteur (CIP 105083) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105083 |