Strain identifier

BacDive ID: 14971

Type strain: Yes

Species: Streptomyces amakusaensis

Strain history: KCC S-0167 <-- S. Suzuki 10-101.

NCBI tax ID(s): 67271 (species)

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General

@ref: 9276

BacDive-ID: 14971

DSM-Number: 40219

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces amakusaensis DSM 40219 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 67271
  • Matching level: species

strain history

@refhistory
9276<- E.B. Shirling, ISP <- S. Suzuki IPCR 10-101
67770KCC S-0167 <-- S. Suzuki 10-101.

doi: 10.13145/bacdive14971.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces amakusaensis
  • full scientific name: Streptomyces amakusaensis Nagatsu et al. 1963 (Approved Lists 1980)

@ref: 9276

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces amakusaensis

full scientific name: Streptomyces amakusaensis Nagatsu et al. 1963

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 9276
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18561positiveoptimum28mesophilic
9276positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
9276tuberin
67770Tuberin

halophily

  • @ref: 18561
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 5 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1856117234glucose+
1856122599arabinose+
1856117992sucrose-
1856118222xylose-
1856117268myo-inositol-
1856129864mannitol-
1856128757fructose-
1856126546rhamnose-
1856116634raffinose-
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase+4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18561-------+---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
9276soil
67770SoilAmakusa, Nagasaki Pref.JapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
92761Risk group (German classification)
185611German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces amakusaensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4617D44268120ena67271
20218Streptomyces amakusaensis gene for 16S rRNA, partial sequence, strain: NBRC 12835AB1841811460ena67271
20218Streptomyces amakusaensis strain NRRL B-3351 16S ribosomal RNA gene, partial sequenceAY9997811496ena67271

GC content

  • @ref: 67770
  • GC-content: 73.6
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 9276

culture collection no.: DSM 40219, ATCC 23876, CBS 615.68, IFO 12835, ISP 5219, JCM 4167, JCM 4617, NBRC 12835, RIA 1163, BCRC 13797, CGMCC 4.1462, KCTC 9753, LMG 19350, NRRL B-3351, VKM Ac-995

straininfo link

  • @ref: 84080
  • straininfo: 13356

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9276Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40219)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40219
18561Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40219.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
84080Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13356.1StrainInfo: A central database for resolving microbial strain identifiers