Strain identifier
BacDive ID: 14971
Type strain:
Species: Streptomyces amakusaensis
Strain history: KCC S-0167 <-- S. Suzuki 10-101.
NCBI tax ID(s): 67271 (species)
General
@ref: 9276
BacDive-ID: 14971
DSM-Number: 40219
keywords: 16S sequence, Bacteria, mesophilic
description: Streptomyces amakusaensis DSM 40219 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 67271
- Matching level: species
strain history
@ref | history |
---|---|
9276 | <- E.B. Shirling, ISP <- S. Suzuki IPCR 10-101 |
67770 | KCC S-0167 <-- S. Suzuki 10-101. |
doi: 10.13145/bacdive14971.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces amakusaensis
- full scientific name: Streptomyces amakusaensis Nagatsu et al. 1963 (Approved Lists 1980)
@ref: 9276
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces amakusaensis
full scientific name: Streptomyces amakusaensis Nagatsu et al. 1963
type strain: yes
Culture and growth conditions
culture medium
- @ref: 9276
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18561 | positive | optimum | 28 | mesophilic |
9276 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
@ref | compound |
---|---|
9276 | tuberin |
67770 | Tuberin |
halophily
- @ref: 18561
- salt: NaCl
- growth: positive
- tested relation: maximum
- concentration: 5 %
observation
- @ref: 67770
- observation: quinones: MK-9(H6), MK-9(H8)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
18561 | 17234 | glucose | + | |
18561 | 22599 | arabinose | + | |
18561 | 17992 | sucrose | - | |
18561 | 18222 | xylose | - | |
18561 | 17268 | myo-inositol | - | |
18561 | 29864 | mannitol | - | |
18561 | 28757 | fructose | - | |
18561 | 26546 | rhamnose | - | |
18561 | 16634 | raffinose | - | |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | gelatinase | - | |
68368 | tryptophan deaminase | + | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
18561 | - | - | - | - | - | - | - | + | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
9276 | soil | ||||
67770 | Soil | Amakusa, Nagasaki Pref. | Japan | JPN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
9276 | 1 | Risk group (German classification) |
18561 | 1 | German classification |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces amakusaensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4617 | D44268 | 120 | ena | 67271 |
20218 | Streptomyces amakusaensis gene for 16S rRNA, partial sequence, strain: NBRC 12835 | AB184181 | 1460 | ena | 67271 |
20218 | Streptomyces amakusaensis strain NRRL B-3351 16S ribosomal RNA gene, partial sequence | AY999781 | 1496 | ena | 67271 |
GC content
- @ref: 67770
- GC-content: 73.6
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 9276
culture collection no.: DSM 40219, ATCC 23876, CBS 615.68, IFO 12835, ISP 5219, JCM 4167, JCM 4617, NBRC 12835, RIA 1163, BCRC 13797, CGMCC 4.1462, KCTC 9753, LMG 19350, NRRL B-3351, VKM Ac-995
straininfo link
- @ref: 84080
- straininfo: 13356
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9276 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40219) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40219 | |||
18561 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM40219.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
84080 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13356.1 | StrainInfo: A central database for resolving microbial strain identifiers |