Strain identifier
version 8.1 (current version)
General
@ref: 54114
BacDive-ID: 149679
keywords: genome sequence, Bacteria, microaerophile, mesophilic, motile
description: Bordetella pertussis CCUG 38168 is a microaerophile, mesophilic, motile bacterium of the family Alcaligenaceae.
NCBI tax id
- NCBI tax id: 520
- Matching level: species
doi: 10.13145/bacdive149679.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Bordetella
- species: Bordetella pertussis
- full scientific name: Bordetella pertussis (Bergey et al. 1923) Moreno-López 1952 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Hemophilus pertussis
@ref: 54114
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Bordetella
species: Bordetella pertussis
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 95.354 | |
| 69480 | 99.996 | negative |
colony morphology
- @ref: 54114
- incubation period: 2-3 days
Culture and growth conditions
culture temp
- @ref: 54114
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 54114
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.985 |
| 69481 | no | 100 |
fatty acid profile
@ref fatty acid percentage ECL 54114 C14:0 3.5 14 54114 C15:0 1.6 15 54114 C16:0 24.5 16 54114 C17:0 4.8 17 54114 C18:0 7.2 18 54114 C10:0 3OH 3.1 11.423 54114 C11:0 3OH 0.2 12.441 54114 C12:0 3OH 1.5 13.455 54114 C13:0 3OH/C15:1 i I/H 0.1 14.469 54114 C14:0 3OH/C16:1 ISO I 2.8 15.485 54114 C15:1 ω6c 0.9 14.856 54114 C16:0 3OH 0.4 17.52 54114 C16:1 ω7c 46.7 15.819 54114 C18:1 ω9c 0.9 17.769 54114 C18:2 ω6,9c/C18:0 ANTE 1.3 17.724 54114 Unidentified 0.4 19.061 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
@ref fatty acid percentage ECL 54114 C14:0 4.2 14 54114 C15:0 1.5 15 54114 C16:0 29.1 16 54114 C17:0 3.9 17 54114 C18:0 6.1 18 54114 C10:0 3OH 4.4 11.423 54114 C11:0 3OH 0.5 12.441 54114 C12:0 3OH 2.3 13.455 54114 C14:0 3OH/C16:1 ISO I 4.5 15.485 54114 C15:1 ω6c 0.8 14.856 54114 C16:1 ω7c 41.8 15.819 54114 C18:2 ω6,9c/C18:0 ANTE 0.8 17.724 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Sequence information
Genome sequences
- @ref: 66792
- description: Bordetella pertussis strain C927
- accession: 520.996
- assembly level: complete
- database: patric
- NCBI tax ID: 520
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.334 | no |
| anaerobic | no | 99.257 | no |
| halophile | no | 75.747 | no |
| spore-forming | no | 96.483 | no |
| glucose-util | no | 81.685 | no |
| aerobic | yes | 76.102 | yes |
| thermophile | no | 98.825 | yes |
| motile | yes | 85.418 | no |
| flagellated | yes | 64.58 | no |
| glucose-ferment | no | 90.327 | no |
External links
@ref: 54114
culture collection no.: CCUG 38168, ATCC 9340, NCTC 8474
straininfo link
- @ref: 104049
- straininfo: 35056
literature
- topic: Enzymology
- Pubmed-ID: 11825003
- title: Characteristics and potency of an acellular pertussis vaccine composed of pertussis toxin, filamentous hemagglutinin, and pertactin.
- authors: Sheu GC, Wo YY, Yao SM, Chou FY, Hsu TC, Ju CL, Cheng Y, Chang SN, Lu CH
- journal: J Microbiol Immunol Infect
- year: 2001
- mesh: Bacterial Outer Membrane Proteins/chemistry, Bordetella pertussis/chemistry, Diphtheria Toxin/chemistry/*toxicity, Diphtheria-Tetanus-acellular Pertussis Vaccines/*immunology, Hemagglutinins/chemistry, Pertussis Toxin, Pertussis Vaccine/chemistry, Tetanus Toxin/chemistry/*toxicity, Toxicity Tests, Vaccines, Acellular/*adverse effects/*therapeutic use, Virulence Factors, Bordetella/chemistry/isolation & purification
- topic2: Phylogeny
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 54114 | Curators of the CCUG | https://www.ccug.se/strain?id=38168 | Culture Collection University of Gothenburg (CCUG) (CCUG 38168) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 104049 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID35056.1 |