Strain identifier
version 8.1 (current version)
General
@ref: 53871
BacDive-ID: 149461
keywords: genome sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive
description: Clostridioides difficile CCUG 37785 is an anaerobe, spore-forming, mesophilic bacterium of the family Peptostreptococcaceae.
NCBI tax id
- NCBI tax id: 1496
- Matching level: species
doi: 10.13145/bacdive149461.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptostreptococcaceae
- genus: Clostridioides
- species: Clostridioides difficile
- full scientific name: Clostridioides difficile (Hall and O'Toole 1935) Lawson et al. 2016
synonyms
@ref synonym 20215 Bacillus difficilis 20215 Peptoclostridium difficile 20215 Clostridium difficile
@ref: 53871
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Peptostreptococcaceae
genus: Clostridioides
species: Clostridioides difficile
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture temp
- @ref: 53871
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 53871 | anaerobe | |
| 69480 | anaerobe | 99.55 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | yes | 99.563 |
| 69481 | yes | 100 |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Clostridioides difficile CCUG37785 | GCA_019067085 | scaffold | ncbi | 1496 |
| 66792 | Clostridioides difficile strain CCUG37785 | 1496.6057 | wgs | patric | 1496 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| flagellated | no | 69.167 | no |
| gram-positive | yes | 91.51 | no |
| anaerobic | yes | 98.691 | yes |
| aerobic | no | 97.437 | no |
| halophile | no | 92.972 | no |
| spore-forming | yes | 93.72 | no |
| motile | yes | 75.27 | no |
| thermophile | no | 92.306 | yes |
| glucose-util | yes | 88.245 | no |
| glucose-ferment | yes | 57.867 | no |
External links
@ref: 53871
culture collection no.: CCUG 37785, ATCC 43601
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Pathogenicity | 35315695 | Genomic and Phenotypic Characterization of the Nontoxigenic Clostridioides difficile Strain CCUG37785 and Demonstration of Its Therapeutic Potential for the Prevention of C. difficile Infection. | Wang S, Heuler J, Wickramage I, Sun X | Microbiol Spectr | 10.1128/spectrum.01788-21 | 2022 | Animals, Bacterial Proteins/genetics, *Bacterial Toxins/genetics, Clostridioides, *Clostridioides difficile/genetics, *Clostridium Infections/prevention & control, Enterotoxins/genetics, Genomics, Mice | Genetics |
| 35583336 | Development of an Effective Nontoxigenic Clostridioides difficile-Based Oral Vaccine against C. difficile Infection. | Wang S, Zhu D, Sun X | Microbiol Spectr | 10.1128/spectrum.00263-22 | 2022 |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 53871 | Curators of the CCUG | https://www.ccug.se/strain?id=37785 | Culture Collection University of Gothenburg (CCUG) (CCUG 37785) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |