Strain identifier

BacDive ID: 149362

Type strain: Yes

Species: Mycobacterium alvei

Strain history: CECT 3021 <-- V. Ausina and M. Luquin CR-21.

NCBI tax ID(s): 67081 (species)

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General

@ref: 53750

BacDive-ID: 149362

DSM-Number: 44176

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Mycobacterium alvei CCUG 37585 is an aerobe, mesophilic bacterium that was isolated from Water.

NCBI tax id

  • NCBI tax id: 67081
  • Matching level: species

strain history

  • @ref: 67770
  • history: CECT 3021 <-- V. Ausina and M. Luquin CR-21.

doi: 10.13145/bacdive149362.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium alvei
  • full scientific name: Mycobacterium alvei Ausina et al. 1992

  • synonyms

    • @ref: 20215
    • synonym: Mycolicibacterium alvei

@ref: 53750

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium alvei

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no91.363
69480100positive

colony morphology

  • @ref: 53750
  • incubation period: 3 days

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
53750positivegrowth30mesophilic
53750nogrowth37mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 53750
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.819

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea+hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase-
68379urease+3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
53750+-+-----++----------+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
53750--++-+----++----+---

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
53750Water1981Barcelona,Llobregat riverSpainESPEurope
67770Water from the Llobregat RiverBarcelonaSpainESPEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

Sequence information

16S sequences

  • @ref: 67770
  • description: Mycobacterium alvei 16S ribosomal RNA gene, complete sequence
  • accession: AF023664
  • length: 1465
  • database: ena
  • NCBI tax ID: 67081

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycolicibacterium alvei JCM 12272GCA_010727325completencbi67081
66792Mycolicibacterium alvei strain JCM 1227267081.6wgspatric67081
66792Mycolicibacterium alvei CCUG 37585GCA_025822365contigncbi67081

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno86no
motileno94.981no
flagellatedno98.185no
gram-positiveyes90.399no
anaerobicno99.386yes
aerobicyes88.128no
halophileno91.969no
spore-formingno83.999no
glucose-utilyes85.561no
thermophileno99.55yes
glucose-fermentno92.541yes

External links

@ref: 53750

culture collection no.: CCUG 37585, CIP 103464, DSM 44176, ATCC 51304, JCM 12272, CECT 3021, KCTC 19709, LMG 19260

straininfo link

  • @ref: 103784
  • straininfo: 13225

literature

  • topic: Phylogeny
  • Pubmed-ID: 1390105
  • title: Mycobacterium alvei sp. nov.
  • authors: Ausina V, Luquin M, Garcia Barcelo M, Laneelle MA, Levy-Frebault V, Belda F, Prats G
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-42-4-529
  • year: 1992
  • mesh: Base Composition, Culture Media, DNA, Bacterial/chemistry, Humans, Lipids/analysis, Mycobacterium/*classification/cytology/isolation & purification/physiology, Mycolic Acids/analysis, Nucleic Acid Hybridization, Soil Microbiology, Sputum/microbiology, Stearic Acids/analysis, Water Microbiology
  • topic2: Cultivation

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
53750Curators of the CCUGhttps://www.ccug.se/strain?id=37585Culture Collection University of Gothenburg (CCUG) (CCUG 37585)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
103784Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID13225.1