Strain identifier

BacDive ID: 14904

Type strain: Yes

Species: Streptomyces albidoflavus

Strain Designation: Duch

Strain history: CIP <- 1997, IFO <- 1969, SAJ <- E.B. Shirling: strain ISP 5455 <- CBS <- J. Duche

NCBI tax ID(s): 1886 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 9555

BacDive-ID: 14904

DSM-Number: 40455

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Streptomyces albidoflavus Duch is a spore-forming, mesophilic, Gram-positive bacterium of the family Streptomycetaceae.

NCBI tax id

  • NCBI tax id: 1886
  • Matching level: species

strain history

@refhistory
9555<- E.B. Shirling, ISP <- CBS, Duch
67770KCC S-0446 <-- IFO 13010 <-- SAJ <-- ISP 5455 <-- CBS 416.34 <-- J. Duché.
116188CIP <- 1997, IFO <- 1969, SAJ <- E.B. Shirling: strain ISP 5455 <- CBS <- J. Duche

doi: 10.13145/bacdive14904.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces albidoflavus
  • full scientific name: Streptomyces albidoflavus (Rossi Doria 1891) Waksman and Henrici 1948 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptomyces griseus subsp. solvifaciens
    20215Streptomyces limosus
    20215Actinomyces sampsonii
    20215Actinomyces globisporus subsp. caucasicus
    20215Cladothrix odorifera
    20215Streptomyces felleus
    20215Streptomyces sampsonii
    20215Streptomyces odorifer
    20215Streptomyces coelicolor
    20215Streptothrix coelicolor
    20215Streptotrix albidoflava
    20215Streptomyces globisporus subsp. caucasicus
    20215Streptomyces canescens
    20215Streptomyces champavatii

@ref: 9555

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces albidoflavus

full scientific name: Streptomyces albidoflavus (Rossi Doria 1891) Waksman and Henrici 1948 emend. Nouioui et al. 2018

strain designation: Duch

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

multimedia

  • @ref: 9555
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40455.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9555GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
41508MEDIUM 122 - for StreptomycesyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (2.000 g);Starch maize (10.000 g)
9555ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
116188CIP Medium 122yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=122

culture temp

@refgrowthtypetemperaturerange
18592positiveoptimum30mesophilic
9555positivegrowth28mesophilic
41508positivegrowth30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

halophily

  • @ref: 18592
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 7.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8), MK-9(H6)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1859217234glucose+
1859222599arabinose-
1859217992sucrose-
1859218222xylose-
1859217268myo-inositol-
1859229864mannitol-
1859228757fructose-
1859226546rhamnose-
1859216634raffinose-
1859262968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18592+++++-+--++

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_720.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_287;98_384;99_720&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: Z76676
  • Sequence Identity:
  • Total samples: 129
  • soil counts: 39
  • aquatic counts: 5
  • animal counts: 85

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
95551Risk group (German classification)
185921German classification
1161881Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces albidoflavus gene for 16S ribosomal RNA, partial sequence, isolate: R1-2A/H206AB9228421192ena1886
20218Streptomyces albidoflavus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4446D44143120ena1886
20218Streptomyces albidoflavus strain DSM 40455 16S ribosomal RNA gene, partial sequenceFJ4060481392ena1886
20218S.albidoflavus (DSM 40455T) 16S rRNA geneZ766761476ena1886
20218S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-1)Z77332314ena1886
20218S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-2)Z77333318ena1886
20218S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-3)Z77334314ena1886
20218S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-4)Z77335319ena1886
20218S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-5)Z77336311ena1886
20218S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-6)Z77337319ena1886
20218S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-7)Z77338319ena1886
20218S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-8)Z77339318ena1886
20218S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-9)Z77340319ena1886
20218S.albidoflavus 16S-23S rDNA intergenic spacer (DSM 40455T; clone-10)Z77341319ena1886
9555Streptomyces albidoflavus gene for 16S rRNA, partial sequence, strain: NBRC 13010AB1842551478ena1886
67770Streptomyces albidoflavus 16S rRNA gene, partialAJ0020901482ena1886

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces albidoflavus strain DSM 404551886.37wgspatric1886
67770Streptomyces albidoflavus NRRL B-1271GCA_000719955contigncbi1886
67770Streptomyces albidoflavus DSM 40455GCA_004195735contigncbi1886

GC content

@refGC-contentmethod
955574high performance liquid chromatography (HPLC)
6777070fluorimetric
6777073.4genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno95.404no
gram-positiveyes93.093no
anaerobicno99.288no
aerobicyes94.423no
halophileno89.133no
spore-formingyes95.499no
glucose-utilyes88.578no
flagellatedno97.76no
thermophileno98.309yes
glucose-fermentno84.138no

External links

@ref: 9555

culture collection no.: DSM 40455, ATCC 25422, CBS 416.34, CBS 920.69, IFO 13010, ISP 5455, JCM 4446, NBRC 13010, NRRL B-1271, RIA 1202, BCRC 13699, CGMCC 4.1291, CIP 105122, ICMP 12537, IMSNU 20133, IMSNU 21006, KCTC 9202, LMG 19300, MTCC 932, NBIMCC 2386, NCIMB 10043, NRRL B-2663, VKM Ac-746, VTT E-991429, KCC S-0466

straininfo link

  • @ref: 84013
  • straininfo: 45753

literature

Pubmed-IDtitleauthorsjournalDOIyeartopicmeshtopic2
19709186Characterisation of Streptomyces spp. isolated from water-damaged buildings.Suutari M, Ronka E, Lignell U, Rintala H, Nevalainen AFEMS Microbiol Ecol10.1111/j.1574-6941.2002.tb00908.x2002
25331336Streptomyces ferrugineus sp. nov., isolated from mangrove soil in Thailand.Ruan CY, Zhang L, Ye WW, Xie XC, Srivibool R, Duangmal K, Pathom-aree W, Deng ZX, Hong KAntonie Van Leeuwenhoek10.1007/s10482-014-0301-62014PhylogenyBacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification, Thailand, Vitamin K 2/analysisGenetics
30276168Screening for Non-polyenic Antifungal Produced by Actinobacteria from Moroccan Habitats: Assessment of Antimycin A19 Production by Streptomyces albidoflavus AS25.Nafis A, Elhidar N, Oubaha B, Samri SE, Niedermeyer T, Ouhdouch Y, Hassani L, Barakate MInt J Mol Cell Med10.22088/IJMCM.BUMS.7.2.1332018Biotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9555Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40455)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40455
18592Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40455.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41508Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17107
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84013Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45753.1StrainInfo: A central database for resolving microbial strain identifiers
116188Curators of the CIPCollection of Institut Pasteur (CIP 105122)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105122