Strain identifier
BacDive ID: 148888
Type strain: 
Species: Porphyromonas canoris
Strain history: CCUG 36550 <-- NCTC 12835 <-- H. Jousimies-Somer.
NCBI tax ID(s): 36875 (species)
version 8.1 (current version)
General
@ref: 53220
BacDive-ID: 148888
DSM-Number: 18809
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Porphyromonas canoris CCUG 36550 is an anaerobe, mesophilic bacterium that was isolated from Dog subgingival pocket,natural occur.periodontitis.
NCBI tax id
- NCBI tax id: 36875
- Matching level: species
strain history
- @ref: 67770
- history: CCUG 36550 <-- NCTC 12835 <-- H. Jousimies-Somer.
doi: 10.13145/bacdive148888.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Porphyromonadaceae
- genus: Porphyromonas
- species: Porphyromonas canoris
- full scientific name: Porphyromonas canoris Love et al. 1994
@ref: 53220
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Porphyromonadaceae
genus: Porphyromonas
species: Porphyromonas canoris
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 53220
- oxygen tolerance: anaerobe
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 53220 C14:0 0.6 14 53220 C15:0 1.3 15 53220 C16:0 5.3 16 53220 C18:0 2.7 18 53220 C13:0 iso 0.5 12.612 53220 C15:0 ANTEISO 2.4 14.711 53220 C15:0 ISO 42.1 14.621 53220 C15:0 ISO 3OH 2.9 16.135 53220 C16:0 3OH 1.5 17.52 53220 C16:0 iso 0.2 15.626 53220 C16:1 ω7c 0.4 15.819 53220 C17:0 iso 1.5 16.629 53220 C17:0 iso 3OH 17.4 18.161 53220 C18:1 ω9c 3.8 17.769 53220 C18:2 ω6,9c/C18:0 ANTE 12.7 17.724 53220 C20:4 ω6,9,12,15c 0.3 19.395 53220 Unidentified 1.5 14.93 53220 Unidentified 1.4 16.295 53220 Unidentified 0.1 18.057 53220 Unidentified 0.4 18.307 53220 unknown 13.566 0.7 13.566 53220 unknown 16.580 0.4 16.58 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 53220 | Dog subgingival pocket,natural occur.periodontitis | 1990 | Helsinki | Finland | FIN | Europe |
| 67770 | Gingival sulcal site of dog |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Canidae (Dog) |
| #Host Body-Site | #Oral cavity and airways | #Mouth |
taxonmaps
- @ref: 69479
- File name: preview.99_2193.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15883;96_1191;97_1405;98_1711;99_2193&stattab=map
- Last taxonomy: Porphyromonas canoris subclade
- 16S sequence: AB525416
- Sequence Identity:
- Total samples: 7207
- soil counts: 153
- aquatic counts: 88
- animal counts: 6928
- plant counts: 38
Sequence information
16S sequences
- @ref: 67770
- description: Porphyromonas canoris gene for 16S ribosomal RNA, paertial sequence, strain: JCM 16132
- accession: AB525416
- length: 1493
- database: ena
- NCBI tax ID: 36875
External links
@ref: 53220
culture collection no.: CCUG 36550, JCM 16132, NCTC 12835, CIP 104881, JCM 11138, DSM 18809, VPB 4878
straininfo link
- @ref: 103375
- straininfo: 56311
literature
- topic: Phylogeny
- Pubmed-ID: 8186085
- title: Porphyromonas canoris sp. nov., an asaccharolytic, black-pigmented species from the gingival sulcus of dogs.
- authors: Love DN, Karjalainen J, Kanervo A, Forsblom B, Sarkiala E, Bailey GD, Wigney DI, Jousimies-Somer H
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-44-2-204
- year: 1994
- mesh: Animals, Bacterial Typing Techniques, Carbohydrate Metabolism, DNA, Bacterial, Dental Plaque/*microbiology, Dogs, Fatty Acids/analysis, Gingiva/*microbiology, Gingival Diseases/microbiology/*veterinary, Nucleic Acid Hybridization, Pigments, Biological, Porphyromonas/*classification/isolation & purification
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 53220 | Curators of the CCUG | https://www.ccug.se/strain?id=36550 | Culture Collection University of Gothenburg (CCUG) (CCUG 36550) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 103375 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID56311.1 |