Strain identifier
BacDive ID: 14887
Type strain:
Species: Streptomyces alanosinicus
Strain history: KCC S-0714 <-- IFO 13493 <-- SAJ <-- ISP 5606 <-- ATCC 15710 <-- Lepetit V/119.
NCBI tax ID(s): 68171 (species)
General
@ref: 9681
BacDive-ID: 14887
DSM-Number: 40606
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Streptomyces alanosinicus DSM 40606 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 68171
- Matching level: species
strain history
@ref | history |
---|---|
9681 | <- E.B. Shirling, ISP <- ATCC <- Lepetit S.p.A. V/119 |
67770 | KCC S-0714 <-- IFO 13493 <-- SAJ <-- ISP 5606 <-- ATCC 15710 <-- Lepetit V/119. |
doi: 10.13145/bacdive14887.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces alanosinicus
- full scientific name: Streptomyces alanosinicus Thiemann and Beretta 1966 (Approved Lists 1980)
@ref: 9681
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces alanosinicus
full scientific name: Streptomyces alanosinicus Thiemann and Beretta 1966
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9681 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
9681 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf | |
9681 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
9681 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
compound production
- @ref: 9681
- compound: alanosine
metabolite production
- @ref: 67770
- metabolite: alanosine
- production: yes
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
9681 | soil | Brazil | BRA | Middle and South America |
67770 | Soil | Brazil | BRA | Middle and South America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 9681
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces alanosinicus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4714 | D44304 | 120 | ena | 68171 |
20218 | Streptomyces alanosinicus gene for 16S rRNA, partial sequence, strain: NBRC 13493 | AB184442 | 1440 | ena | 68171 |
20218 | Streptomyces alanosinicus strain NRRL B-3627 16S ribosomal RNA gene, partial sequence | HQ426712 | 1488 | ena | 68171 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces alanosinicus JCM 4714 | GCA_014650595 | contig | ncbi | 68171 |
66792 | Streptomyces alanosinicus strain JCM 4714 | 68171.4 | wgs | patric | 68171 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
gram-positive | yes | 88.116 | no |
anaerobic | no | 99.039 | no |
halophile | no | 94.058 | no |
spore-forming | yes | 94.277 | no |
glucose-util | yes | 90.285 | no |
thermophile | no | 97.967 | no |
flagellated | no | 98.064 | no |
aerobic | yes | 91.039 | no |
glucose-ferment | no | 87.664 | no |
motile | no | 93.329 | no |
External links
@ref: 9681
culture collection no.: DSM 40606, ATCC 15710, CBS 348.69, CBS 794.72, IFO 13493, ISP 5606, NBRC 13493, RIA 1454, JCM 4714, BCRC 16211, CGMCC 4.1634, KCTC 9683, NRRL B-3627, VKM Ac-1752
straininfo link
- @ref: 83996
- straininfo: 36447
literature
- topic: Metabolism
- Pubmed-ID: 31643127
- title: The l-Alanosine Gene Cluster Encodes a Pathway for Diazeniumdiolate Biosynthesis.
- authors: Ng TL, McCallum ME, Zheng CR, Wang JX, Wu KJY, Balskus EP
- journal: Chembiochem
- DOI: 10.1002/cbic.201900565
- year: 2019
- mesh: Alanine/*analogs & derivatives/metabolism, Azo Compounds/*metabolism, Bacterial Proteins/genetics/*metabolism, *Biosynthetic Pathways, Molecular Structure, *Multigene Family, Streptomyces/genetics/*metabolism
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9681 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40606) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40606 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
83996 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID36447.1 | StrainInfo: A central database for resolving microbial strain identifiers |