Strain identifier

BacDive ID: 14887

Type strain: Yes

Species: Streptomyces alanosinicus

Strain history: KCC S-0714 <-- IFO 13493 <-- SAJ <-- ISP 5606 <-- ATCC 15710 <-- Lepetit V/119.

NCBI tax ID(s): 68171 (species)

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General

@ref: 9681

BacDive-ID: 14887

DSM-Number: 40606

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Streptomyces alanosinicus DSM 40606 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 68171
  • Matching level: species

strain history

@refhistory
9681<- E.B. Shirling, ISP <- ATCC <- Lepetit S.p.A. V/119
67770KCC S-0714 <-- IFO 13493 <-- SAJ <-- ISP 5606 <-- ATCC 15710 <-- Lepetit V/119.

doi: 10.13145/bacdive14887.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces alanosinicus
  • full scientific name: Streptomyces alanosinicus Thiemann and Beretta 1966 (Approved Lists 1980)

@ref: 9681

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces alanosinicus

full scientific name: Streptomyces alanosinicus Thiemann and Beretta 1966

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9681GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9681STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf
9681ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
9681positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

  • @ref: 9681
  • compound: alanosine

metabolite production

  • @ref: 67770
  • metabolite: alanosine
  • production: yes

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
9681soilBrazilBRAMiddle and South America
67770SoilBrazilBRAMiddle and South America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9681
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces alanosinicus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4714D44304120ena68171
20218Streptomyces alanosinicus gene for 16S rRNA, partial sequence, strain: NBRC 13493AB1844421440ena68171
20218Streptomyces alanosinicus strain NRRL B-3627 16S ribosomal RNA gene, partial sequenceHQ4267121488ena68171

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces alanosinicus JCM 4714GCA_014650595contigncbi68171
66792Streptomyces alanosinicus strain JCM 471468171.4wgspatric68171

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes88.116no
anaerobicno99.039no
halophileno94.058no
spore-formingyes94.277no
glucose-utilyes90.285no
thermophileno97.967no
flagellatedno98.064no
aerobicyes91.039no
glucose-fermentno87.664no
motileno93.329no

External links

@ref: 9681

culture collection no.: DSM 40606, ATCC 15710, CBS 348.69, CBS 794.72, IFO 13493, ISP 5606, NBRC 13493, RIA 1454, JCM 4714, BCRC 16211, CGMCC 4.1634, KCTC 9683, NRRL B-3627, VKM Ac-1752

straininfo link

  • @ref: 83996
  • straininfo: 36447

literature

  • topic: Metabolism
  • Pubmed-ID: 31643127
  • title: The l-Alanosine Gene Cluster Encodes a Pathway for Diazeniumdiolate Biosynthesis.
  • authors: Ng TL, McCallum ME, Zheng CR, Wang JX, Wu KJY, Balskus EP
  • journal: Chembiochem
  • DOI: 10.1002/cbic.201900565
  • year: 2019
  • mesh: Alanine/*analogs & derivatives/metabolism, Azo Compounds/*metabolism, Bacterial Proteins/genetics/*metabolism, *Biosynthetic Pathways, Molecular Structure, *Multigene Family, Streptomyces/genetics/*metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9681Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40606)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40606
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83996Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36447.1StrainInfo: A central database for resolving microbial strain identifiers