Strain identifier

BacDive ID: 14883

Type strain: No

Species: Streptomyces griseus

Strain Designation: MD 2428

Strain history: KCC S-0623 <-- IFO 12841 <-- SAJ <-- ISP 5226 <-- E. R. Squibb & Sons MD 2428.

NCBI tax ID(s): 67274 (species)

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General

@ref: 9387

BacDive-ID: 14883

DSM-Number: 40226

keywords: 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Streptomyces griseus MD 2428 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 67274
  • Matching level: species

strain history

@refhistory
9387<- E.B. Shirling, ISP <- F. Arnow, Squibb & Sons, MD 2428
67770KCC S-0623 <-- IFO 12841 <-- SAJ <-- ISP 5226 <-- E. R. Squibb & Sons MD 2428.

doi: 10.13145/bacdive14883.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces griseus
  • full scientific name: Streptomyces griseus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Actinomyces globisporus subsp. flavofuscus
    20215Actinomyces acrimycini
    20215Actinomyces setonii
    20215Actinomyces fimicarius
    20215Streptomyces setonii
    20215Streptomyces fimicarius
    20215Streptomyces globisporus subsp. flavofuscus
    20215Streptomyces baarnensis
    20215Streptomyces acrimycini
    20215Actinomyces griseus
    20215Streptomyces erumpens
    20215Streptomyces argenteolus
    20215Streptomyces flavofuscus
    20215Streptomyces caviscabies

@ref: 9387

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces griseus subsp. griseus

full scientific name: Streptomyces griseus subsp. griseus (Krainsky 1914) Pridham 1970

strain designation: MD 2428

type strain: no

Morphology

multimedia

  • @ref: 9387
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40226.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9387ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
9387GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18562positiveoptimum28mesophilic
9387positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
9387vitamin B12
9387steroids
9387thienamycins
20216Thienamycine
20216Vitamin B12
20216Oxid
20216Progester
67770Vitamin B12

observation

  • @ref: 67770
  • observation: Steroid conversion

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1856217234glucose+
1856222599arabinose+
1856217992sucrose-
1856218222xylose-
1856217268myo-inositol-
1856229864mannitol+
1856228757fructose+
1856226546rhamnose+
1856216634raffinose-
1856262968cellulose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
677709542thienamycinyes
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18562+++++++++++++-+++--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18562+++++-+---+

Isolation, sampling and environmental information

isolation

  • @ref: 9387
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level commentpathogenicity humanpathogenicity animal
185621German classification
93871Risk group (German classification)yes, in single casesyes, in single cases

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces argenteolus strain CGMCC 4.1693 16S ribosomal RNA gene, partial sequenceEU0485401403ena67274
20218Streptomyces argenteolus gene for 16S rRNAAB0458721484ena67274
20218Streptomyces argenteolus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4623D44272120ena67274
20218Streptomyces argenteolus gene for 16S rRNA, partial sequence, strain: NBRC 12841AB1841871475ena67274

External links

@ref: 9387

culture collection no.: DSM 40226, ATCC 11009, ATCC 23882, CBS 662.68, ETH 24234, IFO 12841, ISP 5226, JCM 4623, KCC S-0229, KCC S-0623, NBRC 12841, NIHJ 501, RIA 1168, BCRC 11815, CGMCC 4.1693, IMET 43659, JCM 4229, KCTC 1742, LMG 5967, MTCC 2527, NCIMB 9625, NRRL B-1806, VKM Ac-747

straininfo link

  • @ref: 83992
  • straininfo: 13850

literature

  • topic: Transcriptome
  • Pubmed-ID: 24420617
  • title: Identification and characterization of the carbapenem MM 4550 and its gene cluster in Streptomyces argenteolus ATCC 11009.
  • authors: Li R, Lloyd EP, Moshos KA, Townsend CA
  • journal: Chembiochem
  • DOI: 10.1002/cbic.201300319
  • year: 2014
  • mesh: Amino Acid Sequence, Bacterial Proteins/chemistry, Carbapenems/*biosynthesis, DNA Mutational Analysis, *Multigene Family, Sequence Analysis, Streptomyces/enzymology/*genetics/*metabolism
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9387Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40226)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40226
18562Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40226.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
83992Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13850.1StrainInfo: A central database for resolving microbial strain identifiers